Puntigrus tetrazona (Sumatra barb): 122362671
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Entry
122362671 CDS
T08985
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122362671 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122362671 (ddx6)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122362671 (ddx6)
Enzymes [BR:
ptet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122362671 (ddx6)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122362671 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
122362671 (ddx6)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122362671 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
122362671
NCBI-ProteinID:
XP_043120151
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All DBs
Position
18:complement(12583366..12592033)
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AA seq
484 aa
AA seq
DB search
MSTARMENPVILGLSNQNGQMRGSVKPAGGPGGGGGGSQTTQPAQVKPSSTVNNGNSQPA
PTANTIIKPGDDWKKNLKLPPKDLRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKP
SPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQALVIVPTRELALQ
VSQICIQVSKHMGGVKVMATTGGTNLRDDILRLDETVHVVIATPGRILDLIKKGVAKVNQ
VQMIVLDEADKLLSQDFVQMMEEILSYLPKQRQILLYSATFPLSVQKFMNNHLQKPYEIN
LMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGY
SCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYL
HRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPSSIDKSLYVAEYHSESGE
EVKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagccagaatggagaatccagtgattcttggactgtcgaatcaaaatggccaa
atgcgaggctcggtgaagccagcaggtggtccaggaggaggtggaggggggtcccaaaca
acgcagccagcccaggtcaaaccctccagcacagtcaacaacggcaactcccagcctgca
cccacagccaacactatcatcaagcctggggatgactggaagaagaatctaaagcttcct
ccaaaggatttgcgcatgaaaacttcagatgtgactgcgaccaagggaaacgagtttgag
gattactgcctgaaacgggaactgcttatgggcatctttgaaatgggctgggagaaaccg
tcacccatacaggaggagagcattcccattgcgttgtctgggagggacattctggccaga
gccaagaacggcacaggaaaaagtggcgcctacctcattcccttacttgaacgcattgac
ctgaagaaagacagcatacaagcgttggttatagtgcccactagagaactggctctacaa
gtaagccagatatgtattcaggtcagcaaacacatgggcggggtcaaggtcatggcaact
acaggtggaaccaacctccgtgatgacatcttgagacttgacgaaacagtgcacgttgtc
attgccactccaggaagaattttagacctcatcaaaaagggagtggccaaagtcaatcaa
gtgcagatgatagtgttggatgaggcagacaagctcctgtcacaggactttgtacagatg
atggaggagattctgagctatttgcccaaacaaaggcaaattttgctgtactctgccacc
ttcccactgagtgtgcagaagttcatgaacaaccatctgcagaagccctatgagataaac
ctgatggaggagctgaccctgaagggggttactcagtattacgcctatgtaactgaaagg
cagaaagtccattgccttaatactctgttctccaggctccagatcaatcagtctataatc
ttctgcaattcatcacagcgagtggagctcctggcaaagaagatctctcagcttggatac
tcctgtttctacattcacgccaagatgagacaggaacacagaaaccgtgtgttccatgat
ttcagaaatggcctgtgtcgaaatctcgtctgcactgatctcttcacaagaggaattgat
atacaagctgtgaatgtggtgatcaacttcgatttccccaaacttggggagacgtacctc
catcgtattggcagatctggccgatttggacacttgggtctcgccattaatttgatcact
tacgacgaccgctttaacctgaagggtattgaagagcagctgggtactgaaatcaagccc
attcccagtagtattgataagagtctatatgtggccgagtaccacagtgagagtggagag
gaggttaaactgtga
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