Puntigrus tetrazona (Sumatra barb): 122362851
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Entry
122362851 CDS
T08985
Symbol
sf3b3
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122362851 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptet03021
]
122362851 (sf3b3)
03041 Spliceosome [BR:
ptet03041
]
122362851 (sf3b3)
03036 Chromosome and associated proteins [BR:
ptet03036
]
122362851 (sf3b3)
Transcription machinery [BR:
ptet03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122362851 (sf3b3)
Spliceosome [BR:
ptet03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122362851 (sf3b3)
Complex B
122362851 (sf3b3)
Complex C
U2 SnRNP specific factors
122362851 (sf3b3)
Chromosome and associated proteins [BR:
ptet03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122362851 (sf3b3)
TFTC complex
122362851 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
122362851
NCBI-ProteinID:
XP_043120431
LinkDB
All DBs
Position
18:complement(25834355..25852832)
Genome browser
AA seq
1218 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTYMEVF
GVIRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQ
FLAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFEN
PMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVP
GGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMF
FFLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVAAAMCVLKTGFLFVSTEFGNHYLY
QIAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANED
TPQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFV
NATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTP
GKKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGE
QRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGT
IGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQAQEAVLAMSSRS
WLSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAIFNQVAF
PLQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMA
AAFLNENLPEAIFGAPKAGSGQWASLVRMINPIQGNTLDLVQLEQNEAAFSVAVCRFSNG
GDDWYVLVGVARDMILNPRSVGGGYIYTYRLVGGGDKLEFLHKTPVEDVPLAIAPFQGRV
LVGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNEN
QLIIFADDTYPRWVTTACLLDYDTMAAADKFGNICVVRLPPNTSDDVDEDPTGNKALWDR
GLLNGASQKAEVIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHD
FFQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDR
TPPEVSKKLEDIRTRYAF
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtttctatataatctgaccctgcagcgggcgactggtatctcccatgccatccatggc
aacttctcaggaactaagcagcaggagattgttgtttcccgtgggaaaattctggaactg
ctgcgtcctgatgccaacacgggaaaggtccacacgctgcttacttatatggaggtgttt
ggtgttatccgatccctcatggctttcaggttgacaggtggaactaaagactacgttgtg
gtcggaagtgactctggccgaattgtgatcttggagtaccatccttccaagaatatgttt
gaaaagatacaccaggagactttcggcaagagcggctgcagacgtatcgtaccagggcag
ttcctcgctgtcgacccaaagggcagagctgttatgataggtgccatagagaagcagaag
ttggtatacatcctgaatagagatgcagctgcccgccttaccatctcctcccctctagag
gcccacaaggctaatacacttgtttaccatgtggttggtgtggatgtggggtttgagaac
ccaatgtttgcctgcctagagatggactatgaggaggcagataacgatccaaccggagag
gctgcagcaaacacacagcagactctgaccttctatgagttggacttgggtctcaaccat
gtggtgcgcaagtacagcgaggcgctggaggaacacggcaacttccttatcacagttcct
ggtggttcggatggtcccagcggtgtgctcatttgctcggagaattatatcacctacaaa
aactttggggaccaaccagacatccgttgcccaatcccacgcagaaggaatgacctggat
gatcctgagcgaggcatgatctttgtctgctcagctacccataagaccaaatccatgttt
ttctttctagcccagacagaacagggagacatctttaaggttactctggaaactgatgag
gagatggttactgagatcaggatgaagtattttgataccatcccagtggctgcagccatg
tgtgttttgaagactggcttcttatttgtttctacagagtttggaaaccactacctgtat
cagattgcccacttgggtgatgatgacgatgaacccgagttttcctctgccatgcctttg
gaggagggagacacattctttttccaacctcgccccttaaagaaccttgtgctggtcgac
gagcaagaaaatctttctcccatcatgtcctgccagatagctgatctggctaatgaagac
accccacagttatatgtggcatgtggcagaggacccagatctacactaagagttttgaga
catggacttgaggtttcagaaatggctgtgtctgaactgcccggtaaccccaatgctgtg
tggactgtcaggagacatgtagaagatgagtttgatgcctacatcattgtgtccttcgtt
aacgccaccctggtgctttctatcggtgaaactgtggaagaagtgacagattctggtttc
ttgggaacaacacccaccctgtcatgctcattgcttggggaagatgctcttgtgcaagtc
tacccagatggcatccgtcatatccgtgcagataagagagtaaatgaatggaagactccg
ggaaagaagacaatcgttcgatgtgctgtcaatcagaggcaggtggtcattgctttaact
ggaggagaattggtctactttgaaatggacccgtctgggcagctgaatgaatacactgaa
aggaaggagatgtctgcagatgtggtctgcatgagtttggctaatgtgcctccaggtgaa
cagcgttcccgtttcctggctgttgggttggtggacaatacagtccgcatcatctccctg
gatccatccgactgtcttcagccgttgagtatgcaggctcttcccgcccaaccagagtct
ctttgtattgtggagatgggaggagtggaaaaacaagatgagctgggagaaaagggcacc
attggctttctatacctcaacattggcctacagaatggcgtgttactgcgtactgttttg
gatccagtgactggggacctgtctgatactcgtactcggtatcttggttctcgtcccgtc
aagcttttcagagttcggatgcaggcccaagaagctgttctggccatgtctagtcgttct
tggctgagttactcataccagtctcgtttccacctgaccccactgtcatatgaaacctta
gagtatgcttcagggtttgcttctgaacagtgtcctgagggtattgttgccatttccacc
aacacactgaggattttggctcttgagaaactgggtgccatcttcaatcaggtggcattc
ccactgcagtacacacctcgcaagtttgtcatccacccagagacgaataacctgatcctg
attgaaacagaccacaatgcctacactgaagccaccaaagcccagcgcaagcagcagatg
gctgaggaaatggtggaggcagcaggagaggatgaaagagagctggctgcagaaatggca
gcagctttcttgaacgagaacctgccagaagccatctttggggcacctaaagcaggctct
ggacagtgggcttcattagtacgtatgatcaaccccatccaaggaaacacactggacctg
gtgcagctagagcagaacgaggctgctttcagtgtggctgtatgtcgattttccaatgga
ggcgacgattggtatgtgttggtgggtgttgccagagatatgatactaaatcctcgctct
gttggtggaggctatatttatacctatcgtctagttggaggtggagacaagctggagttt
ttacacaagacgcctgtggaggacgttcccctggctattgcaccctttcagggacgagtg
ttggttggggtaggcaaactcttgcgcatctatgacttgggaaagaagaaacttcttcgc
aagtgtgaaaacaagcatgttcctaacttggtaaccggcatccacactattggccagcgt
gtgatagtatccgatgttcaggaaagtttattctgggtgcgctacagacgcaacgagaac
cagctcatcatctttgctgacgatacatatcctcgttgggtcacaactgcgtgcctgctt
gattatgacaccatggctgctgctgataaatttggaaatatctgcgttgtccgcctgcct
cccaacaccagcgatgatgttgatgaggaccccacagggaacaaggcattatgggacaga
ggcttgcttaacggagcatcacaaaaggctgaggtgattattaattatcacataggagaa
acggttctgtccctccagaaaactacccttatccccggaggatcagaatccctggtgtat
accacactatcaggaggcattggcatcctggtgccgttcacttctcatgaggatcatgac
ttcttccagcacttggaaatgcatatgcgctctgagtttccccctctttgtggtcgcgat
cacctcagcttccgctcgtactattttccagtaaagaatgtgatcgatggagatctatgt
gaacagtttaattccatggacccgcacaagcagaagagcgtctctgaggaattggaccgc
actcctccagaggtgtcgaagaaactggaagacatccgaacacgctatgccttctag
DBGET
integrated database retrieval system
