Puntigrus tetrazona (Sumatra barb): 122362925
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Entry
122362925 CDS
T08985
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
ptet
Puntigrus tetrazona (Sumatra barb)
Pathway
ptet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122362925 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptet03019
]
122362925 (cstf3)
Messenger RNA biogenesis [BR:
ptet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122362925 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
122362925
NCBI-ProteinID:
XP_043120641
LinkDB
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Position
18:complement(13407742..13422762)
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AA seq
716 aa
AA seq
DB search
MSTETPPDQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRAIFKKAREDPRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLAFESNIGDLASILKVERRRFMAFKDEYEGKETALLVDRYKFMDLYPCSPSE
LKALGYKDVSRAKYAALIPEAVVTPSAPALKDEADRKPEYPKPDTSQMIPFQPRHLAPPG
LHPVPGGVFPVPPTAVILMKLLPPPSCFTGPFVQVDELMESLRRCVLPETVDAAVELITG
KQLEMSSEGNGPVENHAVANKSLKRPNADSDEEEDKGSIAPPIHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaaccccaccggaccaggcggctgagtacatcccagagaaggtgaagaaa
gcagagaagaagttggaagaaaacccatatgacctcgacgcttggagcatactgattcgt
gaagcacagaatcaacccatagacaaagccaggaagacatacgagcgacttgtcgcccag
tttcccagctcgggcagattctggaagctatacatcgaagctgagatcaaggctaaaaac
tatgacaaggttgaaaagttatttcagaggtgcttgatgaaggttctgcacattgacctg
tggaagtgttacctctcatatgtacgggaaaccaaagggaaactgcccagctataaggaa
aagatggcgcaggcttatgattttgccttggataagattgggatggagattatgtcctat
cagatttgggtggattacatcaatttcctcaaaggagtagaggccgtggggtcatacgcc
gagaaccagcgcatcacggccgtcagacgcgtttatcagagaggctgcgtcaaccccatg
attaacatcgagcagctctggagggactacagcaaatacgaagagggcatcaatgtgcac
ttggccaaaaagatgattgaagaccggagcagagactacatgaacgccaggagagtcgct
aaggagtatgagacagtgatgaagggtttggaccgtaacgccccctcagtgccgccccag
aactccccacaggaggcccagcaggtggagatgtggaagaaatacatccagtgggaaaag
agcaacccactgcgtaccgaagatcagacactcatcaccaagagagtgatgttcgcctac
gagcagtgccttctggtgctcggccatcacccggacatctggtacgaagcagcccagtac
ctggaacagtccagcaaactactggcagaaaaaggggacatgaacaatgccaagctgttc
agtgatgaggcagctaacatctacgaacgtgccataggaactctgctcaagaagaacatg
ttgctatatttctcttttgcagattacgaagagagtcgcatgaagtacgagaaggttcat
agtatatacaaccgtcttctggccatagaagatatcgatcctacattggtctacatccag
tacatgaaatttgccagaagagccgaaggcatcaagtctggccgcgcaatctttaagaag
gccagagaggatcctcgcacgcggcatcatgtttacgtcactgctgctcttatggagtac
tactgcagcaaggacaaatctgtggcctttaagatattcgagcttggactgaagaagtac
ggtgacattcctgaatacattttggcgtacattgattacctgtctcacttaaacgaggac
aacaacaccagagtcctgtttgagagagtcctgacgtccggcagtctttcccctgagaaa
tctggggaaatctgggcacgcttcctggcctttgaaagcaacattggagacctggccagt
atcctgaaggtggagcgaaggcgcttcatggcctttaaagacgagtacgaaggaaaggag
acggctctgctggtggacagatacaagttcatggatttgtatccctgctcccctagcgag
ctcaaagccctcggctacaaggacgtgtctcgtgccaaatacgcagcactgatccccgag
gcggtggtcactccttctgcccctgcgctgaaagacgaggccgaccgcaaacccgagtat
cccaaacctgacaccagccagatgatccctttccagccccgtcacctggcgcctcccggc
ctacatcctgttcctggaggagtgtttcctgtccctcccactgctgtcatcctcatgaag
ctgctgcctcctcccagctgctttacaggtccgtttgttcaggttgatgagctgatggag
tctctcagaagatgtgtgttacctgagacggtagatgctgctgtagagctgatcaccggg
aagcagttagagatgagcagcgaaggaaacggacccgtggaaaaccacgccgtggctaac
aagtccttgaagcggcccaacgccgattcagacgaggaggaagacaaaggatcgatcgca
cctcccatccacgacatctatcgagcacgacagcagaagaggatccgatga
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