Pseudonaja textilis (eastern brown snake): 113435306
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Entry
113435306 CDS
T09005
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Pathway
ptex03013
Nucleocytoplasmic transport
ptex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113435306 (UPF1)
03015 mRNA surveillance pathway
113435306 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptex03019
]
113435306 (UPF1)
Enzymes [BR:
ptex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113435306 (UPF1)
5.6.2.5 RNA 5'-3' helicase
113435306 (UPF1)
Messenger RNA biogenesis [BR:
ptex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113435306 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
113435306 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
113435306
NCBI-ProteinID:
XP_026554831
Ensembl:
ENSPTXG00000002385
LinkDB
All DBs
Position
Unknown
AA seq
1136 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGGGVA
PGTPGLQGVGVGVGAGGPPSVVVPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVT
HNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQ
GLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIA
VDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGE
LSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPEC
MVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHP
ALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLN
RTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASV
DAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWN
HLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSV
YDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQANGPAA
GGMFAGRGNLKGKTGRGGRQKNRFGIPGASQSNLPNSQASQDVVSQPFSQGPLTQGYISM
SQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagttcgcagacgttgactttcctcgacaccgaggag
gccgagttgctgggcgctgacacgcaaggctccgagttcgagttcaccgacttcaccttg
cccagccagactcaaacgccgcccgggggaggctccgggagcggaggaggaggcgtcgcg
ccggggaccccgggactccagggggttggcgtcggagtgggcgcgggggggccgccctcc
gtcgtcgttccagggcagctggacgcccaggtaaatggaccagatggcatcctccagaat
ggggctgtggatgataatgtgcctaaaaccagccaacttcttgcagagctcaattttgaa
gaagatgaggaagacacttactacaccaaggaccttcctatacatgcctgcagctattgt
ggcatccatgacccagcttgtgtggtctattgtaacaccagcaagaagtggttctgcaat
ggacgtgggaatacctctggcagtcacattgtgaaccatcttgtgagagccaagtgcaaa
gaagtgactcttcataaagatggtcctctgggcgagaccgtcttggaatgctacaattgt
ggctgtcgtaatgtgtttcttcttggtttcatcccagccaaagctgactccgttgtggtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaggatcgctgcttcctttcctggctagtcaaaattcct
tcagaacaagaacaactgagggcccggcagatcacagctcagcagattaacaaactagaa
gaactctggaaggagaacccatctgccactttggaggacctggaaaagcctggggttgat
gaagagccacagcatgtcctccttagatatgaagacgcttatcaataccagaacatcttt
ggtcctctggtcaagcttgaagcagactatgacaagaaattgaaggaatctcagactcaa
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcact
ctgccgaagactgattcagatatgcgtttgatgcaaggggatgagatctgcctcagatac
aaaggggatttggccccactgtggaaaggaattggccatgtcattaaagttcctgacaat
tacggtgatgaaattgcaattgagttgagaagtagtgttggtgctcctgtggaagtgact
cacaacttccaagtagactttgtatggaaatcgacatcctttgatagaatgcagagtgcc
ctaaaaacatttgctgtggatgaaacatccgtttctggttacatctatcacaaacttctg
ggtcatgaggtggaagatgttataattaaatgtcagttgccaaagcgcttcacagcacaa
ggacttccggacctcaaccattctcaggtgtatgcagtgaagactgttttgcagcgtccc
ttgagtcttatccagggcccccctggcacaggcaagactgtgacatcagccacaattgta
tatcacctggcaaggcaaggaaatgggcctgtgctggtttgtgccccaagtaacattgct
gtggaccagctgacagaaaaaatacatcagacggggctgaaggtggtgcgcctgtgtgca
aagagccgcgaggccattgattcacctgtctctttcttagctctgcataaccagatcagg
aatatggatagcatgccagagctccagaaacttcagcaactgaaagatgagactggggaa
ctgtcatccgctgatgagaaacgctaccgagcacttaaacgaacagctgagcgggaattg
ctaatgaatgcagatgtcatttgctgcacatgtgtcggagccggcgacccaaggcttgct
aaaatgcagtttcgttccattttgattgatgaaagcacacaggccactgagccagagtgc
atggtgcctgttgttcttggggcaaaacagttgatccttgtgggcgatcattgccagctc
ggccctgttgtaatgtgcaagaaggcagctaaagcaggcctgtcgcaatccctctttgag
cgactggtggtgctgggcattcggcccattcgcctgcaagttcagtaccgcatgcaccca
gccctgagcgcttttccttccaacatcttttatgaaggatcactccagaatggtgtcact
gcagcagaccgtgtgaagaaggggtttgacttccaatggcctcagccagacaagcccatg
tttttctacgtgacccaggggcaagaagaaattgcaagttctggcacttcttatttgaac
agaacagaggcagccaatgtggagaaaataaccacaaagctactgaaggctggtgcaaaa
ccagatcagattggtatcatcacaccctacgagggccagcgttcatacttggtgcaatac
atgcagtttagtggatctttgcataccaaactttatcaggaagtcgaaatcgctagtgtt
gatgctttccaagggcgagagaaggacttcattatcctctcctgtgttagagccaacgaa
catcaaggcattggcttcctgaatgacccccggcgtctcaatgtggctctcacaagagca
agatatggggtcattattgttgggaatccaaaggcactctccaagcagcctctctggaat
caccttctgaactactacaaggagcaaaaggtcctggtggagggaccattgaacaatctc
cgcgagagcctcatgcagttcagcaagccccgaaaactggtcaacactatcaatccagga
gcccggtttatgacaactgctatgtatgatgcccgtgaagctattatccctggatccgtt
tatgatcgcagcagccaaggccggccatccaacatgtatttccaaacccatgatcagatt
gggatgatcagtgctgggcccagtcatgtcaccaccatgaacattcctatcccattcaac
ttggtgatgcctcctatgcctccaccagggtactttggacaggccaatggaccagctgca
ggtgggatgtttgcaggacgtggaaacctgaaaggcaaaacggggcgtggtgggcgacag
aagaatcgttttgggattccaggagccagccagtcgaacctccccaacagccaggccagc
caagatgtggtctcccagcctttctctcagggccccttgactcagggttacatctccatg
agccaaccctctcaaatgagccagcctggcctctcccagccagaattgtcacaggatagt
taccttggtgatgagtttaaatctcagattgacgtggccctgtcgcaggattcaacttac
cagggggaacgcgcatatcaacatggagtgacggggctgtcacagtattag
DBGET
integrated database retrieval system
