Pseudonaja textilis (eastern brown snake): 113435979
Help
Entry
113435979 CDS
T09005
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Pathway
ptex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113435979 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ptex00536
]
113435979 (COL11A1)
Glycosaminoglycan binding proteins [BR:
ptex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113435979 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
113435979
NCBI-ProteinID:
XP_026555884
LinkDB
All DBs
Position
Unknown
AA seq
1793 aa
AA seq
DB search
MFKPIFYWIPGIEIESAEPVDVLKTLEFHKSPEGISKTSGICINRKNSKGSDAAYRVSKT
AQLSAPTKQLYPGGKFPEDFSVLFTIKPKKGVQSFLLSIYNEHGIQQVGIEVGRSPIFLF
EDQNGKPAPEDYPIFGTVNIADGKWHRVAISVERKSVTMIVDCKKKTTKPLERSSPAVID
TNGITVFGTRILDEEVFEGDIQQMLIVGDPRAAYDYCEHYSPDCDSPVPNAPQAQEPQVE
EYGTEDLIEYDYDYGDPDYKDYKDYKDLETVTEGPPLYDETVAYTEANVVDEYHEYNVAE
VDYGTEAYQTAIPTQTTRRNEQLPVEEIFTEEYVTGEDYNSKTKNNEETDYGNRGVDHSE
AEVVVDGDLGEYDFYEYKDYEKKPTSSTNEEFGPGVPAETDITETTVNGHQVYGEKGQKG
EAAVIEPGMLIEGPPGPPGPPGISGPAGMQGPIGPPGDPGDRGPPGRSGLPGADGLPGPP
GTMLMLPFRFSGGGEKGPAISPQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGSPGSS
GIKGDGGDPGPQGPRGVQGPPGLPGKSGKRGRPGADGARGMPGETGSKGDRGFDGLPGLP
GEKGHRGDRGPQGPPGAPGEDGMRGEDGEIGPRGLPGESGPRGLLGPRGTPGLPGQPGIP
GVDGPPGPKGNLGPQGEPGPPGQQGNPGPQGLPGPQGLIGVPGEKGPQGKPGLAGLPGTD
GPPGHPGKEGQSGEKGDTGPAGHQGPVGYPGPRGVKGADGVRGLKGGKGEKGEDGFPGFK
GDMGLKGDRGEVGSLGPRGEDGPEGPKGRAGPTGDSGGPGQAGEKGKLGVPGLPGYPGRQ
GPKGSTGFPGFPGSNGEKGGRGLHGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTAGGD
GPPGPSGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVV
GPQGPTGETGPIGERGHPGPPGPPGEQGLPGAGGKEGAKGDPGPQGISGKDGPAGLRGFP
GERGLPGTQGAPGLKGGEGPQGPPGPIGSPGERGPAGTAGPIGLPGRPGPQGPPGPAGEK
GGPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPS
GPPGLQGPIGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGEK
GENGDVGPMGPPGPPGPRGPQGPSGSDGPQGPSGSAGSVGAVGQKGEPGEAGNPGPPGEG
GTTGPKGERGEKGESGPPGAAGPPGLKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGTD
GTGGEKGDDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGSEGAP
GKTGPVGPQGPAGKSGPEGLRGIPGPVGEQGLPGVPGQDGPPGPMGPPGLPGLKGDPGSK
GEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSTGSKGDAGIPGPAGPLGPPGPPGLPGPQ
GPKGSKGSSGPGGQKGDGGLPGPPGPPGPPGEVIQPLPMQASKKSKRSIDAKLSVAEDYT
DGMEEIFGSLSSLKEDIEHMKYPIGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQGCTGD
SFKVYCNFTADGETCIYPDKKSEGFRISSWPKENPGTWFSEFKRGKLLSYVDAEGTSISM
VQMTFLKLLSASARQNFTYNCHQSVAWHDVSSDSYDKALRFLGSNDEEMSYDNNPYIKVL
HDGCASRKGYAKTVMEISTPKIDQLPIFDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagccaatattttattggattccaggaattgaaatagaatctgctgaaccagtt
gatgtactcaaaacattagaatttcataaatctccagaaggaatatcaaaaacatcagga
atttgcataaacagaaagaattccaaaggatctgatgctgcctaccgagtttcaaaaact
gcacaactcagtgccccaactaaacaattgtacccaggtggaaaatttcctgaagacttt
tcagttctgtttacaataaaacctaaaaaaggagtccaatcctttcttttatctatctac
aatgaacacggcattcagcaggttggcattgaggtgggcaggtcgcccatcttcttgttt
gaagatcagaatggaaagcctgccccagaagactatcccatctttggtacggtcaatatt
gctgatggaaagtggcatcgggtggccattagtgtggagaggaaatcagttaccatgatt
gtggactgtaagaagaaaaccacaaaaccactcgagagaagcagcccggcagtcattgac
accaatggcattactgtctttggaacacgaattctggatgaggaggtgtttgagggtgat
atccagcagatgctgattgttggtgatcccagagcagcctatgattactgtgagcactac
agcccagactgtgattctcctgtgcccaatgctccccaggctcaagaacctcaagtggag
gaatatggaactgaagatttaatcgaatatgactatgactatggggatccagattataaa
gattataaagattataaagaccttgaaactgtaacagagggacccccactatacgacgag
actgtagcatacactgaggccaatgttgttgatgaatatcatgagtacaatgtggctgaa
gttgactatggaactgaagcttaccagactgcgattcctactcagaccactagacgaaat
gagcaacttcctgttgaagaaatatttactgaagaatacgtaacgggagaggattataat
tcaaagactaaaaataatgaggaaacagattatggaaacagaggagtagaccacagcgaa
gctgaagttgtggtagatggagatttaggcgaatatgatttttatgaatataaagactat
gaaaagaagccaaccagttctactaatgaggagtttgggcctggagttccagcagagact
gatatcacagaaacaaccgtgaatggccatcaggtatatggagaaaaaggacagaaagga
gaagcagctgtcattgaaccaggaatgctcattgaaggacctccaggacctccaggaccc
ccaggtatttcaggccccgctggtatgcaaggccccattggtcctcctggtgaccctggt
gataggggtccaccaggacgttctggtcttccaggggctgatggcttacctggacccccg
ggtaccatgttaatgttaccattccgctttagtgggggtggtgagaagggcccagcgatc
tcacctcaggaggctcaagctcaagctattcttcagcaggccaggattgcaatgagaggt
ccccctggtccaatgggacttactggaagacctggtcctgtgggaagtcctggctcatct
ggtatcaaaggtgacggtggagatccaggacctcagggtcctcggggcgttcaaggtcca
cctggtctgcctggaaaatctggtaaaagaggtcgtcctggtgcagatggagcaagagga
atgccgggagagacaggttctaagggcgacagaggttttgatgggcttcctggactacca
ggtgaaaaaggacacaggggagatcgtggaccacaagggcctcctggtgctcctggggaa
gatggaatgagaggagaagatggtgagattggaccaagaggccttccaggtgaatctggt
ccacgagggttattgggtccaagaggaactccaggactaccaggacaacctggaatccca
ggtgttgatggaccaccaggcccaaaaggaaacctgggtccacaaggggaaccaggaccc
cctgggcagcaaggtaacccaggtccacagggactgccaggtccacaaggtctaattggc
gttccaggtgaaaaaggtcctcagggcaaacctggtctggcaggacttcctggtactgat
ggccctcctggtcatccaggcaaagaagggcagtctggagagaaaggtgacacgggtcct
gcaggtcatcaaggaccagttggctatcctggtccccgtggtgtaaagggtgctgatggc
gtccgagggctaaagggtggcaaaggtgaaaagggtgaagatggcttccctggatttaaa
ggtgatatgggccttaagggtgatagaggtgaagttggttctcttggtcctcgaggagaa
gatggccctgaaggtcccaaaggtcgtgcaggtcccacaggagactccggtggccctggc
caagctggagaaaagggtaaacttggtgttcctggtttgccagggtatccaggaagacaa
ggccctaagggatctactgggtttcctggatttccaggttctaatggtgagaaaggagga
aggggattacatggcaaaccaggtccaagaggacaaagaggacccacaggaccacgtgga
tcgagaggtgcaagaggtccaactggaaaacccggaccaaagggcactgctgggggtgat
ggcccacctggtccgtctggtgaaaggggaccacaagggccccagggacctgttggattt
ccaggacctaagggacctcctggaccacctgggaaagatggcttgcctgggcatccagga
caacgtggtgaaactggttttcaagggaaaacaggcccaccaggccccggtggtgttgtt
ggacctcagggtccaactggggagacaggtccaattggtgaaagaggtcaccctggacct
cctgggccaccgggtgaacaaggacttcctggtgctggagggaaagaaggcgctaagggg
gatccaggtcctcaaggcatttctgggaaagatgggcctgcaggactgcggggtttccca
ggagaaagaggcctgccaggaactcagggtgcaccaggtctgaaaggcggtgaaggtcct
caaggcccacctggtccaattggttctcctggtgaacgtggcccagcaggtacagcagga
ccgattggtttaccaggacgtcctggaccccaaggtcccccaggccctgcaggagaaaag
ggaggcccgggtgaaaaaggtcctcagggaccagctggacgtgatggaatacaggggcct
gtgggtcttcctggccctgcaggaccagccggttctcctggagaagatggcgacaagggt
gaaattggagagcctggtcaaaaaggaagtaaaggtgacaagggagaaaatggaccttca
ggaccacccggtcttcagggtcccattggtgctcctggaatagcaggaggtgatggggag
cctggtccaagaggacaacaaggaatgttcggacagaaaggcgatgaaggtccacgaggc
tttcctggtcctccaggacctattggccttcagggtcttcctgggcccccaggtgaaaag
ggtgaaaatggcgatgttggtccaatgggccctccaggtccccctggccctagaggccct
caaggtccaagcggatcagatggtcctcaaggtccatcaggttcagctggctctgttgga
gcagttggtcagaagggtgagcctggagaagctggaaaccctgggccccctggagaaggt
ggcacaacgggtccaaaaggtgaaagaggtgaaaaaggtgaatctgggccacctggagca
gcaggacctcctggacttaaaggacctccaggtgatgatggtccaaagggaaatccgggc
cctgttgggttccctggtgatcctggaccccctggagaaccaggtccagccggaactgat
ggcacaggaggggaaaaaggtgacgatggcgatccgggccaacccgggccgccaggtcct
tctggtgaagcaggtccccctggccctcctggaaagagagggcctcctggagcagctggc
gcagaaggaagacaaggtgaaaaaggagcaaagggtgaggctggatcagagggtgctccg
ggaaaaactggcccagttggtcctcaaggtcctgcaggaaaatctggcccagaaggactt
aggggtattcctggccctgtgggagaacaaggtttacctggagtacctggtcaagatggc
ccaccaggtcccatgggtccacccggcttgccaggattgaaaggagatcctggttcgaaa
ggagaaaagggacatcctggattgattggattgattggacctccaggagaacaaggagaa
aagggagacaggggtctgcctggtacacagggatctacgggatcaaaaggagatgcggga
attcctggaccagctggcccacttggtcctccgggccctcctggtttaccaggtcctcaa
ggccccaaaggttctaaaggttcatcgggtcctggtggccagaaaggtgatggtggttta
cccggccctcccggccctcctggacctccaggtgaggttattcaaccattgccaatgcaa
gcctccaaaaagtccaagagatccatagatgccaagctatctgttgcagaagattacact
gatggaatggaggagatctttggctcactgagttctctgaaagaagatattgaacatatg
aaatacccaattggcactcagaacaacccagctcgaacctgcaaggatctgcagctctgt
cacccagattttccagatggagagtattggattgatcctaaccaagggtgtactggggac
tctttcaaagtatactgtaacttcacagctgatggggaaacttgcatctatccagataaa
aaatcagagggatttaggatttcatcgtggccaaaggaaaatccaggaacctggtttagt
gaatttaagagaggcaaactgctttcttatgtggatgctgaaggcacttctattagcatg
gtacaaatgacattccttaaactgctaagtgcctctgcccgacaaaacttcacttacaac
tgtcatcagtcggtagcctggcatgacgtctcttctgacagctatgacaaagcattgagg
ttcttagggtcaaatgatgaagagatgtcttatgacaacaatccgtacatcaaagtgctt
catgatggctgtgcatcaagaaaaggctatgcaaagactgttatggaaatcagtactccc
aaaattgaccaactgcctatcttcgatgtgatgattaatgactttggtgatcaaaatcag
aagtttggctttgaagtgggtccagtctgtttccttggttaa
DBGET
integrated database retrieval system
