Pseudonaja textilis (eastern brown snake): 113438226
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Entry
113438226 CDS
T09005
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Pathway
ptex03015
mRNA surveillance pathway
ptex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113438226 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
113438226 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptex03019
]
113438226 (PABPC1)
03041 Spliceosome [BR:
ptex03041
]
113438226 (PABPC1)
Messenger RNA biogenesis [BR:
ptex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113438226 (PABPC1)
mRNA cycle factors
Stress granule specific factors
113438226 (PABPC1)
Spliceosome [BR:
ptex03041
]
Complex C
Other components
Complex C specific factors
113438226 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
113438226
NCBI-ProteinID:
XP_026559279
Ensembl:
ENSPTXG00000001075
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTSQITQLRPSPRWAAQGARPHPAFQNMPGAIRPTAPRPPFSTMRPASQVTRVMSTQ
RVANTSTQTMGPRPAAAAAATTPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNNPAGVPSV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcccagctacccgatggcctcgctctacgtgggcgacctgcacccc
gatgtcaccgaggccatgctctacgagaagttcagccccgccgggcccatcctctccatc
cgcgtctgcagggacatgatcacccggcgctcgctaggctacgcctatgtcaacttccag
cagcccgccgacgctgaacgagctttagataccatgaattttgacgtcattaaaggcaag
cctgtgcgtatcatgtggtctcaacgtgatccatctcttcgaaaaagtggcgttggcaac
attttcattaaaaacttggataaatcaattgataataaagctttgtatgatacattttca
gctttcggaaacatcctctcttgtaaggttgtatgtgatgagaatggatccaaaggctat
gggttcgtacattttgaaacacaagaagctgcagaaagggctattgaaaaaatgaacgga
atgctgcttaacgatcgcaaagtatttgttggaaggtttaaatcacgcaaagaacgggaa
gcagagcttggagctcgtgctaaggagttcactaatgtttacatcaagaattttggagaa
gacatggatgatgagagactgaaagaactctttggcaagtttggacctgccttgagtgtg
aaagttatgactgatgaaagtggaaaatccaaaggttttggctttgtcagttttgaaaga
catgaggatgcccaaaaagctgtagatgagatgaatggaaaggaactcaatgggaagcaa
atatatgttggacgagctcagaaaaaggttgaaagacaaacagagcttaaacgtaaattt
gaacaaatgaagcaggataggattacaagataccagggtgtaaatctatatgtgaaaaat
ttagatgatggaattgatgatgaacgtttgcgcaaagaattttcaccatttggcacaatc
actagtgcaaaggtcatgatggaaggaggtcgcagtaaaggatttgggtttgtctgcttt
tcttcaccagaagaagcaaccaaagcagtaacagaaatgaatggtagaattgtggccacc
aaaccactctatgtggctttagctcaacgtaaagaggaacgccaagctcacctcaccaac
caatatatgcagagaatggcaagtgtgagagcagtgcccaatcctgtcatcaatccttac
caaccagcacctccttcaggttatttcatggcagctatcccgcagacacaaaaccgtgca
gcctactatcctactagccagattactcaacttagaccaagtcctcgctgggctgctcag
ggtgccagacctcatccagctttccagaatatgccaggtgccatccgccctacagctccc
agaccaccatttagtaccatgaggccagcttcacaagttacacgagtcatgtcaacacag
cgtgttgcaaacacatcaacacagaccatgggtccacgtccagcagcagcagccgctgca
actactccagctgtacgcactgtcccacagtataagtatgctgcaggggttcgcaatcct
caacagcatcttaacacacagcctcaggttgctatgcagcagcctgctgtccacgtacaa
ggtcaggaaccattgactgcttccatgttggcttctgcccctccacaagaacaaaagcag
atgttgggagaacgtctgttcccccttatccaagccatgcaccctactttggcgggtaaa
ataactggtatgttgctagaaattgacaactctgaacttcttcacatgcttgagtctcct
gaatctcttcgttcgaaggttgatgaagctgtagccgtactgcaagcccatcaagctaaa
gaagctgctcagaaagcagttaacaatccagcaggagttccaagtgtctaa
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