Pseudonaja textilis (eastern brown snake): 113439080
Help
Entry
113439080 CDS
T09005
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ptex03009
]
113439080 (PDCD11)
Ribosome biogenesis [BR:
ptex03009
]
Eukaryotic type
90S particles
Other 90S particles
113439080 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
Suf
HAT_PRP39_N
HAT_PRP39_C
OB_RRP5
OB_RRP5_4th
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
ARM_TT21
TPR_CcmH_CycH
ARM_TT21_5th
HAT_Syf1_M
TPR_15
TPR_12
Motif
Other DBs
NCBI-GeneID:
113439080
NCBI-ProteinID:
XP_026560496
Ensembl:
ENSPTXG00000000924
LinkDB
All DBs
Position
Unknown
AA seq
1813 aa
AA seq
DB search
MSSVEENFPRGGTQKKGQEEKTVRQPTVEDDNLFKTQHEEVTRKRKKKHEDQKEPKKLKP
EKKAVSKISAKDFELLSAESLTEGTLLLGCVKKCNQFDLVISLPNCLTGFVKITCICDVY
SELLNKQVATDEPVQELNSLSDLFPPGMLVRCAVVGIEKNALGHQKIHLTINPKDINKGL
NPTVLKAGMLLSGSVSSIEDHGYLIDIGVPGTKAFLHRQEAQGYLQLFNKGTELMIGQYL
NCLIEEVKNGGRIIRTSINQSEVASAIATEKQNWSHANLLPGLVVKAQVQEVTSSGISLS
FLSSFTGIVDFMHTNSLKTGHLSPNQMVKACILSNNPASKAIRLSLRPVFLQPGIQLGQL
SNDRLGMVVADSKVEMFLKNIGAVFILDDGSHAFSHIKYFPKTSKSFKTEVFKPGSKHTC
RIIDYSLIDDMIVVSLKQHIINAPFLRYHDMHPGQVLEGKVMTLKPLGMEVKITESIKGF
VPNLHLADVKLKQPEKKYSTGTTVKCRVLVCNPETKKLILTLKRTLVNSKLPVLDSFEDA
KPGLITHGFVACVKDFGCIVKFYNDVRGLVPTNELGLLPLTAPQEAFYEGQVVKVTVLKC
EPEQERLLLSFRLEEDAIAKNGRTETSKDCEMAYKTGQIVDVKILNKKKDGLEVAILPNN
VSAYLPMAQLSDHVSNSRLWWYWLKEGDVLQKVICLHNKGGHIILSRKPALISSMEDEHV
VKSFADIQPGLLLTGFVRNIMSYGVFVEFPYGLTGLAPKSAMSDKFVTDTKDHFVIGQTV
LAKVTSVDEEKQRILLSLKMSECSVEESVPDSFGLLQQYFNELQEIMSFMSNRGDTSVAK
KLSRLKVGQRVELVVTEVKADGSAVFSAPCVSGLTVIAIHSQLGGKSILEGQKAKAVVLC
VDLLKSQIYVSLREELLSVKAKKLILNSQHEAVVQHVATEHAVVSLLGTGQLTAIPVASH
LNDTFRFDSEKLKMGQSVKVTLKSTQIGDHGMVFAVQSSGKKKSVIRSRHESETLEDTSF
VTKQLPSSGDIVSGIVKSVKPTHVLVAFNDGLIGSIHASQILDDVTVGTFPTSLLKVGQK
INARVIGGRGIKSHKYLPITHTHFTHTFLELSIRPSELKEESKAALNAENDSPEETLKPG
QTVTCYVQQYNVMKKRLEVEVTPTIRGRVQQLLLSSNPKDIKHAKKCFRKGQALIATVTD
CDNSATKLSLSLTGTYSLEKGTIVLGSVKRMIPQVGLLILLPFGRIGKASLFHLNDSYTE
QPLEDFSVGKIVRCYILSIEDNALKVSLRPSRTNPKGHHKVEDPEIASLDNIQNGQLIRG
YVKSIKESGISLGLSDSVVGQISLQYVTPFFVPDHSLCMKYIQTDQLLTAKVLSINRQEN
LVELSILPEDTGKPSVIPCDEKPCSEMDTPSQKSRNQRRKHPESEHEVTPAKKRAYCTED
GDSGVEVYYREEEEKEKKHKKKSKQEKEVPRLKVSASFMWEEGLNVLDGTTLIAKEHSSD
SEEENDAESVAKKQTKKKQELEKQKAEKELSKLEAALMDPKRQPQTADDFDRLVLGSPDS
SILWLQFMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEERLM
KVFERAVQYNEPLKVFQQLADIYSASEKYKEADDLYNTMLKRFRQEKCVWIKYTTFLLKR
GSVEAAHRLMPRALKCLPDKEHVDVISKLAQLEFQFGDAEHGKAMFENMLSTYPKRTDIW
SVYIDVMIKHGSQKEVRDIFERVIHLNLTAKKMKFFFKRYLEYEKTYGTVETIQAVKAAA
LEYVKSKNSLAES
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgtggaggagaattttccaagaggaggtacacagaagaaaggacaggaagaa
aaaacagtcagacaaccaacggtagaagatgataatttattcaagactcaacatgaagaa
gtaactcggaaaagaaagaaaaaacatgaagatcaaaaggaaccaaaaaaacttaagcct
gagaagaaagctgtttcaaaaatcagtgctaaagattttgaacttttgtcagcagagtct
cttacagaaggaacattgctgttgggatgtgtgaaaaagtgtaatcaatttgatctggtg
atcagcttaccaaactgtcttactgggtttgtgaaaataacatgcatatgtgatgtctat
agtgaactgctaaataagcaggtggccactgatgagcctgtgcaggaactgaattctctc
tcagacttgttccctccaggaatgttggtgagatgtgctgtggtaggcatagagaagaat
gctttgggacatcagaagatacacttaactattaatccaaaagatatcaacaaaggtttg
aatcctacagttttgaaagcaggcatgctactctctgggtccgtatctagtatagaagac
catggttaccttattgatataggtgttcctggaacaaaagcatttcttcatcggcaggaa
gctcagggctatctgcaattattcaataaagggactgagctgatgatagggcaatatttg
aactgccttattgaagaagtaaagaatggtggaaggataatacgaacatccatcaatcag
tcagaggttgcttcagccattgctacagaaaaacaaaactggtcacacgccaacttgcta
cctgggctagtagtgaaagcccaggttcaggaggtaacttcttctggcatttcgctaagt
tttctctcttcctttactggaattgtggatttcatgcacacaaattctctaaaaacagga
catttgtcaccaaatcagatggtgaaggcctgtattctttcaaataatcctgcctccaag
gcaattcgcctttctttgcgccctgttttccttcagcctggcatccagcttggccaactt
tccaatgatagacttggcatggtagtagctgactcaaaagtagagatgtttctcaaaaac
attggtgctgttttcatactggatgatggcagtcatgctttttcacatataaagtatttt
ccaaagacttccaaatctttcaaaactgaggtgtttaagcctggaagtaaacatacatgc
cgaattattgactacagcttgatagatgacatgattgtggtgtctctgaaacaacatatt
atcaatgctccatttctgagataccatgatatgcatcctgggcaagtgctagaaggaaaa
gtgatgactctaaagccattgggcatggaagtgaagatcactgagagtatcaaaggcttt
gtccccaatttacatcttgcagatgtgaaattgaaacagccagagaagaagtatagcaca
gggactactgttaagtgccgggtacttgtctgcaatcctgaaacaaagaagcttattctg
actcttaagaggacccttgttaattccaagctccctgtccttgacagttttgaagatgcc
aagccaggcctgatcactcatggttttgttgcgtgtgttaaggattttggctgtattgtg
aaattctataatgatgtgaggggcttagtacccactaatgaacttggtttgctcccctta
actgctcctcaagaagccttctatgaaggccaggtagtcaaggtgactgtattgaaatgt
gagcctgaacaggaaagattgttgctgtcattcagattggaagaggatgctattgcaaag
aatggtagaacagaaacttcaaaggactgtgaaatggcatataaaactgggcagattgta
gatgtaaaaattctgaacaagaaaaaagatggcctagaagttgcaatcctacccaacaat
gtttcggcctaccttcccatggcacaactctctgatcatgtgtccaatagtaggttgtgg
tggtactggctcaaggaaggtgatgttctccaaaaggttatatgcctccataacaaagga
ggtcacattatcttgagtagaaagccagcattgatttcctctatggaggatgaacatgta
gtgaagagttttgctgatatccagcctggattgctgcttactggctttgtgagaaacatc
atgtcttacggtgtatttgtggagtttccctatggtttgactggtctggcccccaaatcg
gcaatgagtgacaagtttgtgacagacaccaaagaccattttgtgataggtcaaactgta
cttgccaaggtgaccagtgttgatgaggagaagcagcgcatcttgctgtccctgaagatg
tcagagtgctctgttgaggagtctgttcctgacagctttggcctattgcaacagtacttt
aatgaactgcaggagattatgagcttcatgagcaatagaggtgataccagtgtggctaag
aaactctccagattaaaagtggggcagagggtagaattggtggttaccgaagttaaggct
gatggttcagcagttttcagtgccccgtgtgtttctggtttgactgtaatagccattcac
agccaacttggaggcaaaagtattcttgaaggtcaaaaagcaaaagctgtagttctctgt
gttgatcttctgaaatcacaaatctatgtatctcttcgagaggaactgctttctgtcaaa
gccaagaagttaatcctgaattctcagcatgaagctgttgtacagcacgtggctacagag
catgcagttgtttccttgttaggaacaggtcagctgactgcaattcctgtggcttctcac
ttgaatgacacattccgatttgattctgaaaaactgaagatgggacagtcagtcaaagtg
actctgaaaagcacacagattggtgatcatgggatggtatttgctgtgcaaagttcaggg
aagaagaagagtgtaatcagatcacgtcatgaatcagagacactagaggatacatcattt
gtaacaaaacagttgccaagctcaggagacatagtcagtggaattgtgaagtctgtcaaa
cccacccatgtcttagtggcatttaatgatgggttgattggctccattcatgcgtcccag
atcctggatgacgttactgtaggcacttttccaacatcattacttaaagttggacagaag
attaatgctcgggtgattggtggcagaggcattaaaagtcacaaatatttgcccatcacc
cacacccacttcacccatacattcctagaactcagtatccgaccaagtgaactgaaagag
gaaagcaaagcggccttgaatgctgaaaatgacagcccagaagaaacactgaaacctggg
cagactgtgacatgctatgttcagcagtacaatgtgatgaaaaaacggctggaggtggag
gtcactcccaccatcagagggagagttcagcagctgctgctttcttcgaatcccaaggat
ataaaacatgccaagaaatgcttcagaaaaggacaggcattgattgcaacagtaacagat
tgtgataattctgcaaccaaactctctctgtcactaacaggcacttattcattggagaaa
ggaacaattgtgctgggcagcgtgaaacgaatgattccacaagttggtctacttattctc
ctcccatttgggaggattggcaaagccagtcttttccacctaaatgattcatacacagaa
cagccgcttgaagactttagtgttggaaaaattgtcagatgttatattctttccattgaa
gacaatgcattaaaagtatccctccgaccatccaggacaaatcctaaaggccatcataaa
gttgaagatcctgaaattgcttcccttgataacattcagaatggtcaactcatcagaggc
tatgtcaaatccattaaagaatcaggcatctctttggggttgtctgattcagtggtgggt
caaatttcccttcaatatgtcaccccattctttgtgccagatcattcactctgtatgaag
tacatacaaacagatcagcttctcactgccaaagttctcagtataaacagacaagagaac
cttgtggagctctctatccttcctgaagacacagggaagccaagcgttattccatgtgat
gaaaagccatgtagtgaaatggatacaccctcccagaaatcaagaaatcaaaggaggaag
caccctgaaagcgagcatgaagtaacgccagcgaaaaagagagcttattgcactgaggat
ggtgatagtggtgttgaagtttattatcgggaggaagaggagaaggaaaagaagcataag
aagaagtctaagcaggaaaaagaagttccacgactgaaggtttcagccagttttatgtgg
gaggagggcttaaatgtgctggatggaaccacgttgattgcaaaggagcacagctcagac
agtgaggaagaaaatgatgctgaatctgtggccaagaaacaaacaaaaaagaaacaggaa
ctggagaagcaaaaggcagagaaggaactctccaagctggaagctgccctgatggatccc
aagcgacagccgcagacagcagatgactttgaccgcttggtccttggcagccctgacagc
tccatcctttggttgcaattcatggcttttcatctccaagctacagagatcgaaaaagct
agagctgttgcagaaagggcactaaaaacaatctcctttagagaggaacaagaaaagctg
aatgtgtgggtcgctttgctgaacctggagaacatgtatggcacagaggaaagactgatg
aaagtttttgaaagagcagttcagtacaatgaacctctgaaggtctttcagcagttggca
gacatctacagtgcgtctgagaaatataaggaagccgatgacctatacaatacaatgctg
aaacgcttccgtcaagaaaagtgtgtgtggataaagtataccacttttcttctgaaacgt
ggttcagtggaggcagctcacagacttatgccacgggctctgaaatgcttgccagacaaa
gagcatgtggatgtgatttcaaaactggcacagttagagtttcagtttggtgatgcagaa
cacggcaaggccatgtttgaaaacatgctgagcacatatcctaaacgtacagacatctgg
tcagtgtacatagatgtaatgataaaacatggcagccaaaaagaagtccgggatattttt
gaaagagtgattcacctaaatttaacagcaaagaagatgaagtttttctttaaacgctat
ctggagtatgagaaaacgtatggcacggtggaaaccatccaggctgtgaaggcagctgca
ttggagtatgtgaaatccaagaacagccttgcggagagctaa
DBGET
integrated database retrieval system
