Pseudonaja textilis (eastern brown snake): 113440415
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Entry
113440415 CDS
T09005
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Pathway
ptex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113440415 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptex03021
]
113440415 (PCF11)
03019 Messenger RNA biogenesis [BR:
ptex03019
]
113440415 (PCF11)
Transcription machinery [BR:
ptex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113440415 (PCF11)
Messenger RNA biogenesis [BR:
ptex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113440415 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
113440415
NCBI-ProteinID:
XP_026562577
Ensembl:
ENSPTXG00000003566
UniProt:
A0A670XYG0
LinkDB
All DBs
Position
Unknown
AA seq
1735 aa
AA seq
DB search
MSGGGAATASEGAAIGGGGGGSGTTTGGGNSEDACRDYQSSLDDLTFNSKPHINMLTILA
EENVPFAKDIVSLIEAQIAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVSTFVNVF
EKVDENTRKSLFKLRSTWDEIFPLKILYALDVRVNSVDPAWPVKPLPPNVNTSSIHVNPK
FLSKSPEEPAAPSSTVCSLPVSCSAVSSTPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQ
QKKLELELEQTKAQLAVSLSVQQSGSNLGQAPLKQHVPQPPHMPVKAPHPVCLPPEKNRL
SPLHDAKTANRDPRLNRTSQHSSHLKDQTHRKDFLVNAVSQPDPKTSKTPQSEKQNATKP
EKLKQNEKLPKKEFDQMDAKLKSPSPLQNKLLHPKEARNQECENPRVAEINKRDPRLKKH
ILEKPDGKDDDIKEKRRCMERKDKEEHRSVGGRNKVINGIVQKQDPNTEESEKPSGKAGR
SSTRKRSRSPRSRSPSSHSPKRRERRSPKRRLRSLSPTGSKIGKPRQSGPKQSHLEDFGS
GARDDRSSNKRNIKQEVRDSRRPKKIHEDRPQEGMNQHSSKSNSEPKENVENWQGSKSSK
RWKSGWEENKNPQLTEEHQGLGKSPHQRHRDTWASNKGAPSPRTPKQQHRLSVDANLQIP
KELTQANKREILKKASERLTSGEITQDEFLVLCHKIRQLFQYQEGKHRCEWDNTPGEKGI
SKKKPLLSESDLIYHEHKAKLKRTQVQHSFPRINMMDPEEILEYHLPDGLFSAMDCDQTK
NKCSAQFGERSRRHSPVSGSRPYSDNSPHDVRRRHDEPSASKGLREEQRINDIFKRARYE
ETEKPFTDLPGSRFGASDGKQRFSSLIEDRAHFEGSPRHPGIRASGDGQAVHFEGPANAA
PRIEGPQAQTNLRFEGSLGQPASPFDGPQGQSGGKGSHMFDGPPAQLAGGPLRFDGPSGQ
VSTGSAIRFEGPIGQPGGGLRFEGPLGQSVGGMRFEGAHGQPSGGMRFEGPHGLATPGIR
FEGPHGQPSAGMRFEGMHDQPSNNIRFDGQPSGGLRFEGPHGQPSNAIRFEGPHDRPVGP
HGPPGNGLRFEGPHGQPVGPHGQQGSGLRLEAPLMQPVGSLGQPGSNMPFDTPHGQPIGP
HVQPASGLRFEGPHGQPVGPHGQPLGSRFEGPHNPPLGPHGQLGISPRFEAPSVQAGGGL
RFEGPINQTRFDGCPSRFDGQPGQPSILQRLDGLHVQPGSRFEIGPAQTPPRFDGPPGQQ
VQPRFDTILQRFDDPQHPATRYDLLLGHQGPRIESVANHPGSRLETAPYGQTAPYNEAPN
QPPYNGASQGLQFQRPDQMFDNPQGPNFNAPPVSGAQHFPNAMNRAPGPFYDDKNLQGPQ
FRNFNNMTVGNVQPPQQVPVLPVSSGQPFNQGQPLLPVHAQNPGGFGQNQPGNIPLSYPD
NHLGQLDVNELFSKLLSTGILKSLQPDSSSSQVSEVSTQPPPEEEEDDQDQNEDIPDLTN
FVIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGVD
ESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKASSFDSTPSPSKTPVE
NPLNIMLNIVKQEGQDSCNSPKVKEEPEEKAADCTDGNIPESAEIKTEPLKVESV
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcgccgcgacggcgtcggaaggggccgccatcggtggcggcggcggc
ggcagcggcaccaccaccggtggcggcaacagcgaagacgcctgccgcgactaccagtcg
tcgctggatgacctgacgttcaacagcaagccgcacatcaacatgctgaccatcctggcc
gaggagaacgtgcccttcgccaaggacatcgtctcgctgatcgaggcgcaaatcgccaag
gctccttctaatgagaaacttcctgttatgtacctaatggactccattgtcaagaatgtt
ggacgagaatatcttgctgcgtttactaaaaacctagtttcaacatttgttaatgtgttt
gaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgttccacgtgggatgaa
atttttcctctgaagattctctatgctctcgatgttcgggtgaattcagttgaccctgct
tggcctgttaagccgttaccccctaatgtgaatacttctagcatccacgtgaatcctaag
tttttaagtaaatcgcctgaggaacctgctgcacctagctctacagtctgttcccttcct
gtgtcctgttctgctgtgtcctctactccaattgttcctgaaatacaaaagaacttaacg
caagagcagctaataaggcaacagctgctggcaaaacaaaaacagttgttagaacttcaa
cagaagaaattagaacttgaattagaacagacaaaagcacagctggctgtttccctcagt
gttcagcaaagtggatctaatctgggccaagcacctttaaaacaacatgtgccacagcca
cctcacatgccagttaaagcaccccatccagtttgtctgccaccagagaaaaaccgtttg
tctccactccacgatgccaaaacagccaatagagatcctcgtctcaatagaacaagtcag
cattcatctcatttgaaagatcagacccataggaaagacttcctggtgaatgcagttagt
cagcctgacccgaagactagcaaaactccacagagtgaaaagcaaaatgccacaaagcca
gaaaaattaaaacagaatgagaaactgccgaagaaagagtttgatcaaatggatgcaaag
ttgaaatcgccttctcctttgcaaaataagctgcttcaccctaaagaagccaggaaccaa
gaatgtgagaatcccagggtggctgaaatcaacaagagagaccccagattgaaaaaacat
attctagagaaaccagatggcaaagatgatgacatcaaagaaaaaagaaggtgcatggag
aggaaagacaaagaggaacatagatcagttggtggtagaaataaagtaattaacggcatt
gtacaaaagcaagatcccaatacagaagagtcagagaaaccgagtggaaaggcaggaagg
tcaagtactaggaaacggtcacgttcccctagatctcgatcaccatcttcacattctccc
aaacgaagagaaagaaggtctcctaaaagaaggcttaggagcctctccccaaccggatct
aagatcgggaaaccacgacagtctgggcccaaacagtctcacctggaggattttgggtca
ggagcacgggatgacagaagctcgaacaagaggaatatcaagcaggaagtgagagattct
aggaggccgaagaaaatccacgaagaccgaccccaagaaggaatgaatcaacattcttcc
aagtcaaattcagaacccaaagaaaatgtggagaattggcaaggttccaagtcaagcaaa
aggtggaaatctggctgggaggaaaataaaaaccctcaacttactgaagagcaccaagga
cttggaaaatcccctcatcagaggcacagggatacttgggcaagtaataaaggagctcct
tcacctcgcaccccgaaacagcaacatcggttaagtgtagatgctaatttgcagataccc
aaagaactgacccaggcaaacaagagagagatccttaagaaggcaagcgaacgtctcaca
tctggcgaaataacacaggatgagttcctggttctgtgtcataagattcgccaacttttc
cagtatcaggaaggaaagcatagatgcgagtgggataataccccaggtgaaaaggggatt
tccaaaaagaagcctttattatctgaatcggatttaatataccatgaacacaaagctaag
ctaaaacgaacgcaagttcaacattcatttccaagaatcaatatgatggatcctgaagaa
atattagagtatcatttacctgatggattattttctgcaatggactgtgatcaaacaaaa
aacaaatgtagtgctcagtttggcgaaagatcaagacgacattctcctgttagtggcagc
agaccatactctgataattctccacatgatgtgaggagaagacacgatgagccaagtgct
tcgaaaggtcttcgggaagagcagaggatcaatgacattttcaagcgagcaagatacgaa
gagacggagaaaccgttcactgaccttccaggatcacgatttggggcctccgatgggaag
caaaggtttagttctttgattgaggacagagctcattttgaaggttcccctcgacatcct
ggcataagggcaagtggagacggacaagcagtccattttgaagggccagctaatgccgct
cctcgaattgaagggccacaagcacagactaatctaaggtttgaaggatccctaggtcag
ccggcttctccgtttgatgggccccaaggacagtctggaggaaaaggttctcacatgttt
gatgggccaccagcacagcttgcgggtggtcccttaaggtttgatggaccctcggggcaa
gttagtacaggaagtgctatacggtttgagggtccgataggacagccagggggaggttta
cgatttgaggggcctttgggccaatctgtgggtggaatgagatttgaaggggcccacggt
caaccttcaggaggaatgaggtttgaggggcctcacggccttgcaacacctggtattagg
ttcgagggacctcacggccagccttctgctggaatgaggtttgaaggtatgcatgatcag
ccatcaaataatataagatttgatggtcagccttcaggtgggttgaggtttgaagggcct
catggccaaccttcaaatgccataagatttgaaggacctcatgaccggccagtgggacct
catggtccaccaggaaatggattgagatttgaggggccacatggacagcctgtaggacct
catggccaacaaggatctggtctaagattagaagccccgctcatgcaaccggtggggtcc
ctcgggcaaccaggaagtaatatgccatttgatacgccacacggacagcccattggtcca
cacgtgcagcctgcgagcggtctgagatttgagggccctcatgggcagcctgtagggccc
cacggtcagccccttggttctaggtttgaggggcctcacaatccacctctggggccacat
ggacagctggggatttctcccaggtttgaggcaccttcagttcaggctggaggtggactt
agatttgaaggacctattaaccagacaaggtttgatggctgtccgtcaagatttgatggt
cagcctggccagccatccattttacaaagactggatggattgcatgtacagcctggttca
aggtttgaaattgggcctgctcaaacaccacctcgattcgatggcccacctggtcagcag
gtccaacctcggtttgacacaatacttcagcggtttgacgatccccaacacccggcaacg
cgatacgacctcctccttggtcatcagggcccaagaattgaaagcgtagctaaccatcct
ggctcaagattagagacggcaccatatggacaaaccgccccttacaacgaagctcccaac
cagccaccttataatggggcatcacaaggactgcagttccagagacctgaccaaatgttt
gataacccccaaggaccaaacttcaatgccccacctgtttctggggcacagcactttccc
aatgcaatgaacagggccccaggacctttttatgacgacaagaatcttcagggccctcag
ttcagaaattttaataatatgacagttggaaacgttcagccaccacagcaggtacctgtc
ctgccagtatcttctggccagcctttcaatcaagggcagccactattgccagtccatgca
caaaaccctggaggttttggtcaaaatcagccagggaacatcccactttcctaccctgat
aatcatcttggacagcttgatgtgaatgagctattttcaaaactactctctacaggaatc
cttaaatctttacagccagattcatcttcatcacaagtcagtgaagtttcaactcaacca
cctccagaggaagaagaggatgatcaagatcagaatgaggatattccagacctaactaat
tttgtgatagaagaactaaaacaacgttacgacagtgttataaacaggctttacactggc
attcagtgttactcttgcggaatgaggtttacaacttcccagacagatgtctatgcagac
catctggattggcactatcgccagaaccgtacagaaaaggatgttagcaggaaagtcact
cacagaagatggtactacagcttaacagattggatagaatttgaagaaatagccgattta
gaggagcgtgcaaagagccagttctttgaaaaagtacatgaagaagttgtgttaaaaact
caagaagctgctaaggagaaggagtttcagagtgtccctgcgggcccagctggagtggat
gagagctgtgaaatctgccaggagcagtttgagcaatattgggatgaggaagaggaggaa
tggcacttaaaaaatgcaattcgtgtagaggaaaagatctaccatccatcgtgctacgaa
gattatcaaaaggcttcatcatttgattccaccccatctccaagcaagactcctgtggag
aacccactaaatattatgttgaatattgtcaaacaagaaggacaggactcctgtaacagc
cccaaagtcaaagaagaaccagaagaaaaagctgcagattgcacggatgggaatatacct
gaatctgctgaaattaaaacagagcctctaaaggttgaatcggtttaa
DBGET
integrated database retrieval system
