Pseudonaja textilis (eastern brown snake): 113441537
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Entry
113441537 CDS
T09005
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Pathway
ptex03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113441537 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptex03400
]
113441537 (LIG3)
Enzymes [BR:
ptex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113441537 (LIG3)
DNA repair and recombination proteins [BR:
ptex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
113441537 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
RNase_Y_N
DUF3802
Motif
Other DBs
NCBI-GeneID:
113441537
NCBI-ProteinID:
XP_026564368
Ensembl:
ENSPTXG00000004746
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MQALSAAFLKGARNLSRSEKLAWLPKKTPHRLTSVFRFLNKGALPLTGLRYHQSGLSSFP
LPGALHVCHLTSFSAASEMAEQRYCVDYAKRGTAGCKKCKEKILKGMVRIGKVVPNPFTE
SGGDMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQEAEKEMINQHISDLSSKTA
NTPKKKTVIQAKISPSGQISSPKKMPLVSSNPSPRKFSGFTAKSGTSEETATSGSSHKPS
LSTEKSDPKHKDCLLREFRKLCAMVAEESSYNVKTQIIQNFLQKGTSGDGFRGDLYLTIK
LLLPGVIKSVYNLNDKQIVKLFSRTFNCSQEDMVRDLEQGDVSETVRIFFEQSKSCPPAA
KSLLTIQEVDEFLTQLSKLSKEEEQQNLLQEVASRCTANDLKCIIRLIKHDLKMNAGAKH
VLDALDPNAYEAFKASRNLHDVVERVLKNQQESQPGMKKILSVQAALMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKKGDHFCYFSRSLKPVLPHKVAHFKDFIPKAFP
GGHSMILDAEVLLIDTKIGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNEVSLMDRPL
RERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMINRVIREGLEGLVLKDLKSIYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPDSQKWCTVTKCA
GGHDDATLARLQKELDMVKISKDPSKIPDWLKINKNYYPDFIVPDPKAAPVWEITGAEFS
KAEAHTADGISIRFPRCTRIRDDKDWTTSTTLPQLRELYQISKEKSDFLVVAAEEENSTA
GSSGETDGQPKLSSPQKAAKQHSKKSPAKAKKPEASKLVDKSPLKKTEGKRGEKRKAPEM
EVDKRKQVLLDVFTGVKLYLPPSVEGFRKLKRYFIAYDGDLVQEYEATSATHVMERMEDN
PAAKHVSPEWIWECIRKRRLVTPC
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcaggctctctctgcggcttttctgaaaggagccaggaaccttagcagaagtgaaaaa
ttggcctggttgccaaagaagacacctcaccgtctgaccagtgttttcagattcctcaat
aagggtgccttgcctttgactggcctccggtaccaccaatctggcctctccagctttccc
cttccaggagctttgcatgtttgccatctgacatccttctccgctgcctccgagatggca
gaacagcggtactgtgtggactacgctaagcgaggcactgctggctgcaaaaagtgcaaa
gagaagattcttaaagggatggtgcgcattggaaaagtggtgcccaatcccttcactgaa
tccggtggggacatgaaggagtggtatcatgtcaagtgcatatttgagaaactggagagg
gctcgggccacgacaaagaagatcgaagatatcacagacctggagggttgggaggaactg
caggaggctgaaaaggagatgatcaatcaacacatctcagacctttcttccaaaactgca
aacactccaaagaaaaaaactgttatccaggcaaagatttctcctagtggacaaatatca
tcacccaagaaaatgcctctggtttcttcaaatccttcaccaaggaaattttcaggtttt
acagcaaagtcgggcacttctgaagaaacagccacctctggctcttcccacaagcccagc
ttgtccaccgagaagagtgatccaaaacacaaagactgtttgctgcgggaattcagaaag
ctgtgtgcaatggtggccgaggaatccagttacaatgtaaaaactcagataattcagaac
ttcttacagaagggaaccagtggagatggctttcggggtgatctctacctaaccatcaag
ctactcttgcctggggtcattaaaagtgtttataacttgaacgacaagcagattgtgaag
ctcttcagtaggacgttcaactgcagccaggaagacatggtccgagaccttgagcagggt
gatgtttcagaaacggtgcggatcttctttgagcaaagcaagtcttgccctcctgcggcc
aagagccttttgacaatccaggaagtagatgagttcctgacgcagctatccaaactttcc
aaagaagaggagcagcagaacctactgcaagaagttgcatcgaggtgcaccgctaatgac
ctgaagtgcatcattcgactgattaaacacgacttgaaaatgaatgctggcgcgaagcac
gtacttgatgcattggaccccaatgcttatgaggctttcaaagcatcccgtaatctccat
gatgtggtggagcgagtgctgaagaaccaacaagaatctcagccaggcatgaagaaaatt
cttagtgtccaggcagccttgatgaccccagttcaacccatgctggctgaagcttgcaaa
tcgattgaatatgccatgaaaaagtgtcccaatggcatgtatgcagaaattaagtatgac
ggagagcgtgtccaggtgcacaaaaagggagatcatttctgctatttcagccgcagtctg
aaacctgttctccctcacaaggtggctcattttaaggactttattcccaaggcctttccg
ggaggacacagtatgatcttggatgctgaagttcttctgatcgacaccaagatagggaag
cctctgccttttgggacgctgggagtacataagaaagctgctttccaggatgccaatgtg
tgcctttttgtctttgactgcatctacttcaatgaagtcagtttgatggacaggcctctg
cgtgagcgtcgcaaatttctccatgataacatggtggaaattcccaatcgaattctcttt
tcagagatgaagcatgtcacgaaagcttcagacctcgctgacatgatcaaccgagtcatc
cgggaagggctggagggattggtgctgaaagatctcaagagtatttatgaaccaggaaaa
cgccactggctcaaagtgaagaaggactatctgaatgaaggagcaatggcagacacagca
gacctggtggttttgggcgccttctatggccaggggagcaaaggtgggatgatgtccatc
tttctcatgggttgctatgatcctgacagccagaagtggtgcacggtgaccaaatgtgct
ggtggacatgatgatgccacgcttgcccggctgcagaaagaattggacatggtgaaaatc
agcaaggatcccagtaaaattccagactggttaaagattaataagaattattatccggat
ttcattgttccagacccaaaggcagcaccagtctgggagatcacaggcgctgaattctct
aaagcagaggcccacacagctgatgggatctcaatccgcttcccccggtgtactcgtatc
cgggatgacaaagattggactacctccactaccctcccacaactcagggagctgtaccaa
atatctaaagaaaaatcagacttcttggtagttgctgcagaagaagagaactccacagca
ggcagcagtggagaaactgatggccagcccaagttatcttctcctcagaaggctgcaaaa
cagcattccaagaagtcccctgcgaaagctaagaagcctgaagccagcaaactggtagat
aaatctccactgaaaaaaactgagggaaagcgaggagaaaaaagaaaagcacctgagatg
gaggtggacaaaagaaagcaggtgctactggacgtcttcactggggttaaactttatctt
cccccttccgtggagggtttcaggaaactcaagcgttatttcatagcctatgatggagac
ctggttcaagaatatgaggccacttcagcaacacatgtgatggagaggatggaagacaac
ccagctgctaagcatgtgtcccccgagtggatttgggaatgcatccgaaagagaagactg
gtgactccatgctag
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integrated database retrieval system
