Pseudonaja textilis (eastern brown snake): 113449076
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Entry
113449076 CDS
T09005
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Pathway
ptex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113449076 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptex03019
]
113449076 (SKIV2L)
Enzymes [BR:
ptex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113449076 (SKIV2L)
Messenger RNA biogenesis [BR:
ptex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
113449076 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
113449076 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Rib_recp_KP_reg
DUF3516
AP3D1
Motif
Other DBs
NCBI-GeneID:
113449076
NCBI-ProteinID:
XP_026575820
Ensembl:
ENSPTXG00000017627
LinkDB
All DBs
Position
Unknown
AA seq
1067 aa
AA seq
DB search
MASPGLLNLTNLLGALDAFELEASSDEEGKEKTEEVEKRKKKGKNKGAREEEIPPSEPAP
LHRVNSLEELVLKEVTPIPESAPQATPAPATVPPKEQWAILVDVSSPVDDFYKRIPDPAF
KWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIYTSPIKAL
SNQKFRDFRNTFGDVGLLTGDVQLHPDASCLIMTTEILRSMLYNGSDVLRDLEWVIFDEV
HYINDSERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKRKKIYVISTLKRPV
PLEHYLYTGNSQKTQNELFLLVDSRGTFLTKGYYDAVDAKKDRTSKHSQTFGAKQPMHAG
AGPGQDKNIWLSLIDMLRKKDQLPVVAFTFSRNRCDENASMLTTVDLTTTTEKSEIHVFF
QKCISRLKGTDRQLPQVLHMVDLLKRGIGVHHSGILPILKEVVEMLFSKGLVKILFATET
FAMGVNMPARTVVFNSVRKHDGANFRDLVPAEYIQMAGRAGRRGLDTTGMVIILCKNQVP
EMSDLHRMMLGKPTRLQSQFRLTYTMILNLLRVEALRVEDMMRRSFSEFHTRKDSKVYEH
RIAQLSSILANMEMPDTSRQLGDLQEYYSVVRELQEIRERIQRRVMESMNGLKALSVGRV
IVVNNQEHKNALGVILQVSSDAANRVFSTLVMCEKNSMERDLTEGQESNPPPSAEVPLPE
DLLHTKLFLPEGPCGHTIKKLGPADILGITTKTLRVNAERILDDFRKRQMPRFRNDPPGP
SAATATQELLRLAEGSPEGLPLLDPVNDLQLKDLEVVERMIQARRLEERLPEFQCVHSPL
FHIEFVRFRERQRVLDELDQLRFLLSDQSLLLLPEYHQRVEVLRSLGYINEGGAVELKGS
VARQISNHELLLTQLLLDNALTDLRPEEIVALLSCTVCQVRTQVEPQLPSVLQKGIEHIR
LVAEQIALLQRKCGLQESVEDFVEQYKFGLVEVVYEWARGMPFAEIARLTDVQEGIIVRC
IQRLDETCREMRNAARVTGEPTLHAKMEAASNMIKRDIVFAASLYTQ
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggcctccccggggttgttgaatttgaccaatttgctgggtgccctggatgcctttgag
ttggaggcctccagtgatgaagaaggcaaagagaagacagaggaagtagagaagagaaag
aagaaagggaagaataaaggagcaagggaagaagagatccctccctcagaaccagcccca
ttgcacagagtgaacagcctggaggaactggtgcttaaggaggtgacacccatccccgaa
tcagccccacaggccacacctgcccctgccacagtgccccctaaagaacagtgggctatc
ctggtcgatgtaagctcccccgtggacgatttctacaagcgaattcctgatccagccttc
aagtggccttttgaacctgacgttttccagaaacaggcaattctccacttggagaagcat
gattcggtttttgtcgccgcccacacctctgcgggaaagaccgtcgtggctgaatacgcc
attgctctgtctcagaagcacatgacacgcaccatctacacatccccaatcaaagcgctt
tccaaccagaagtttcgggatttcaggaatactttcggggatgttggcttgttgacagga
gacgttcagctgcatccagacgcctcctgcctcatcatgacaacggagattctcaggtct
atgctctataatggctccgatgtcctcagagaccttgagtgggtgatcttcgatgaagtg
cattacattaatgattctgagcgtggtgtggtttgggaagaggtcctcatcatgttgccg
gaccacgtaaacataattttgctgagtgctaccgtccccaacaccctggagtttgctgac
tggattgggcggatcaaacggaagaagatttatgtgatcagcacactgaagcgccctgtt
ccactggagcattatctgtacactggaaatagccagaagacgcagaatgagcttttcctc
ctggtggattcccgcgggacgttccttacgaaggggtattatgacgctgtagatgccaaa
aaggaccgaactagcaagcactcccagacctttggggccaaacagccaatgcacgccgga
gccgggccgggtcaggacaagaacatctggctctccctcattgacatgctccgcaagaag
gaccaactgccggtggtggccttcacgttctctcgcaatcgctgtgacgaaaacgcctcc
atgctgaccaccgtcgacctgaccaccacgacggagaaaagtgagatccatgtcttcttc
cagaagtgcatctcccgactgaagggaaccgatcggcagctgcctcaggttcttcacatg
gttgaccttttaaaacgtggaattggagtgcaccacagtggcatcctgcccatcctcaag
gaggtagtggagatgcttttcagcaaaggcctcgtcaagatcctcttcgccacagagact
ttcgccatgggggtgaacatgccagcaaggactgtggttttcaattcagtccgtaaacac
gacggtgctaatttccgggacttggtaccagctgaatacatccagatggcaggccgggct
gggcgtcgaggtctcgacaccactgggatggtgattattctgtgcaaaaaccaagtgcct
gaaatgtccgaccttcaccgcatgatgttgggcaaacctactcggttgcagtcccagttc
cgcctgacctacaccatgatcttaaacctgttgagagtggaggcactccgagtggaagac
atgatgaggagaagcttctccgagttccacacccggaaggacagcaaggtctatgaacac
agaattgcccagctgagcagtatattagccaacatggaaatgccagacacatcaaggcag
cttggtgacttacaagagtattattctgtagtccgagaactgcaagagatacgggaacgc
attcagaggcgagtcatggaatcgatgaatggattgaaagccctttctgtggggcgagtg
attgtggtgaacaaccaagagcacaagaatgccctgggagtcatcttgcaggtttcttca
gacgcagccaatcgggtcttcagcactttagtgatgtgtgagaagaactccatggagcgg
gacttgactgaaggccaggagtcaaatcctcctccatctgctgaggtgcccctacccgag
gatcttctccacacaaagctcttccttcctgaaggcccctgtggacacaccataaagaaa
ctgggccccgcagatattctgggcatcacaacgaaaaccctccgtgttaacgccgagcgt
atcctggacgatttcaggaaacgacaaatgcccaggttcaggaacgacccacctggacca
tcagcggccaccgcaacccaggagctgctgcgtttagcggagggctctccggaaggcctg
ccacttctggatcccgtgaacgacctccagctgaaggatctggaagtcgtagagcgcatg
atccaggctcgccgtctggaggaacgtttgccagagttccagtgtgtgcacagccccctc
ttccacatagagtttgtacgcttccgagagcgccaacgagtgttggacgaactagaccag
ctgcgcttcctgctgtcggaccagtcccttctcttactgcctgagtatcaccagcgcgtc
gaagtcctgcgttccctgggctacatcaacgaaggaggagccgtggagctcaaggggagc
gtggcccgtcagatcagcaaccacgagctgctcctgacgcagctgcttctggacaacgcc
ctgaccgacctgcggcctgaggagatcgtggccttgctgagctgcacagtgtgccaggtc
cgcacccaggtggagccccagctgccctctgtccttcagaagggcatagagcacatccgc
ttggtggccgaacagatcgccctcctgcaacgcaagtgcggcctgcaagaatcggtcgag
gattttgtggagcagtacaaattcgggctggtggaagtggtttacgaatgggcccgtggc
atgccctttgccgagatcgcccgcctgaccgacgtgcaagaaggcattatcgtccgctgc
attcagcgcctggatgaaacctgccgcgagatgcgcaacgctgcccgggtgacgggggag
ccgacgctgcacgcgaagatggaagccgcctccaacatgatcaagagagacattgtcttt
gccgctagcctctacacccagtga
DBGET
integrated database retrieval system
