Pseudonaja textilis (eastern brown snake): 113450202
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Entry
113450202 CDS
T09005
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
ptex
Pseudonaja textilis (eastern brown snake)
Brite
KEGG Orthology (KO) [BR:
ptex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ptex04147
]
113450202 (COL18A1)
00535 Proteoglycans [BR:
ptex00535
]
113450202 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
ptex00536
]
113450202 (COL18A1)
Exosome [BR:
ptex04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113450202 (COL18A1)
Proteoglycans [BR:
ptex00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
113450202 (COL18A1)
Glycosaminoglycan binding proteins [BR:
ptex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113450202 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF959
DUF1554
DUF6538
Motif
Other DBs
NCBI-GeneID:
113450202
NCBI-ProteinID:
XP_026577147
LinkDB
All DBs
Position
Unknown
AA seq
1835 aa
AA seq
DB search
MARVIVSAWLLLVLLCCLANAQGWRNWFWSDSKETTLSPTRAAEAEDETSQDPSTSAATA
SQDAPFESTTDPEPRGKVGTIFTLKQPDFTPTIPVPAAATSPSQEESRGRNITGVGVEIL
SVTEGIQNLVQLLEEKTTNRTEGTEVPTTTKARASPNPVMEPGSIQNITANLTGDIQTSL
KTKKPEGATKLARLWNKDLALLWNKTRAFPKKPGKPRQGSASFSFSPDGHFSGTMLVFQE
SPEEGQEVAFTPPATRAAWGTFSKKQGILSTAKALKLQEPQANSSSSGSLHAGMPSKVVG
TLESWVLPYVTNPSQPVSKGSGAHLSFKSHPFFKHFGIGVAGAKTNHSRGSVSNSSATNV
MDSPPANNSDSLKFLLTYAVQHSNSSSGLPSFLPGLTPSAGQCLPLPTKLSYCNHLGTKH
FRVPNYLHHGSEEEVWAALHEWEGLLKSRCHRYLEWFLCLLLVPGCNASLPVTPPPCRGF
CEALKDLCWTHWKEGHLPISCESLPEEDGPYSCVFVNVSAENFSREVGLLELIGDPPPDQ
ITKIYGPDKSPAYVFRPDANAGQVARYHLPSPFYRDFSLLFYIQPTSDNAGVLFALTDAS
QSIIYVGVKLSEVKDGKQQIIFYYTEPGSQNSNVAATFSVPSLVNLWTRFALSVRDYNVV
LYMECEEFKTVHLERSSGKIELEEGAGLFVGQAGGADPDKYQGIIVELKIKDNPWAAGYQ
CVEEDDDCDTCGGSGSGLDIKQPSSEKESVIPLLSNLPLPTPVTSPTIAKKTVQLEETEY
IERPTYVPASGAKGEKGDLGEKGDRGAKGDPGTGVLSTSGDKGEKGEKGELGVKGSAGFG
YPGSKGQKGEPGTPGLPGPIGPPGPPGTIMRHDGSTVEHPGAMGPPGLPGKEGQPGKDGE
PGDPGEDGKPGDVGPQGFPGTPGEPGLKGEKGEPSVGVRGPPGPPGPPGKPGLSSKLDKL
TFIDMEGSGFGSELESLRGPKGPPGPPGPPGVPGLPGQPGRFGTNGTDFPGLPGLPGVPG
RNGNSGIPGPPGPLGPPGKDGIPGQPGEKGAPGEPGEMGFPGQKGSQGVPGLPGSPGEPG
LAGLPGPMGPRGLPGPPGPGIAAEFVDMEGSGFPFVSGGPGTRGPEGPPGLPGLPGLPGP
PGPKGDEGIIGLPGLPGEKGYPGLPGLDGRPGLEGFPGPQGQKGEEGGPGPKGEKGQDGI
GLPGPPGPPGPAVYLSSEDKIVPVLPGPEGPKGPKGDPGTPGLQGYPGLKGEKGEPGVIT
RPDGIILAKGEKGEPGPSGPMGPAGSPGRYGRKGELGFPGRPGRPGMNGLKGEKGDPADL
SGALGLRGPPGPPGPPGPPGSPVPVYENNAFSDLGPPGPPGLPGYHGQKGEKGEQGLPGP
PGQFPYDLSRFSSTFRGETGDKGDPGMKGEKGESGVGSSAAGLPGPQGYPGLPPPGPQGP
PGAGFEGHPGPQGPPGPPGPPGPPGPPSFPGPHRQHISIPGPPGPPGPPGPPGISDPPSL
GVRILATYQNLMSRAHEVPEGQLLFIQDREELYIRVHNGFRRILLEERISIPGSGLDNEV
YERSSSIHYSHGGTASSGSHRPFQPHLPVHARPEYNAYSTAKPWRGDESVVDPHHLPEQP
AVHPPRQGAQQESLDHFFPNNRQTETAPLAVHTHHDFQPALHLIALNTPQSGSMRGIRGA
DFQCFQQARQVGLSGTFRAFLSSRLQDLYSIVRRADRSTVPIVNLRDEVLFNNWENLFSG
SEAPFRTGVRILSFDGRDVLRDSAWPQKYMWHGSDSKGRRLTESYCETWRTDDTVVTGQA
SSLASGKLLEQKSNSCRNAFIVLCIENSFMTSSKK
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagtaatagtcagtgcttggcttctgctggtgctcctctgctgcttagccaat
gcccagggctggaggaattggttttggagtgattcaaaagaaaccacgctgtctcccaca
agagctgccgaggctgaagatgagacaagccaggacccttccacatcagcagctactgcc
agccaagatgccccctttgaaagtactactgatcctgagcccagggggaaagtggggacc
atatttaccctgaagcaaccggactttactccaaccatcccagtccctgcagcagcaaca
tctccttcccaggaagaaagcagaggaaggaatattacaggagtgggagtggagatcctt
agcgtgactgaaggcattcagaatttggttcagcttttggaggaaaagacaaccaacagg
acggaggggaccgaggtacctaccacaaccaaggccagagcatcacccaaccctgttatg
gaaccagggagtatccagaacattactgctaacttaacaggtgacatacagacctccctg
aaaacgaagaagccagagggggcaacaaagcttgctcgtctgtggaacaaagacttggct
cttctgtggaacaagacgcgcgccttcccaaagaaacctgggaaaccccggcaaggtagt
gcctctttctcattttcacctgatggtcatttcagtggcaccatgttggtttttcaagaa
tctccagaagaggggcaagaagttgctttcactcccccagcaacaagggcagcctggggc
actttctccaaaaaacaagggattttgtccactgcaaaagctttgaaattgcaggaaccc
caggctaacagcagcagcagcggcagcttgcatgcaggaatgccgtccaaggtggtgggt
actttagagagctgggttctgccttatgttacaaatcccagccagcctgtctccaaaggc
agcggagcacacctcagctttaaaagccaccccttctttaagcattttgggataggagta
gctggtgcaaaaacaaaccattctagaggttcggtttctaattccagtgcaactaatgtt
atggattccccccctgccaataactctgactctcttaagtttctactaacctacgctgtg
caacatagcaatagcagttcagggcttccttccttcttacctggattgactccatcggct
ggccagtgcttgcccttaccgaccaaattgtcgtattgcaaccacctgggcacgaagcat
ttccgagtgccaaattatttgcaccatggcagcgaggaggaagtttgggctgctttgcat
gagtgggaggggcttcttaaatctcggtgtcaccgctacttggagtggtttctctgcttg
ctactggtacctgggtgcaatgcttctctcccggtcacaccaccaccctgtcggggattt
tgtgaggccctgaaagatctgtgttggactcactggaaagaggggcaccttccaatatcc
tgtgaatctctcccagaggaggacggtccatattcatgtgtatttgtaaatgtttcagca
gaaaatttcagcagagaagttggtctcttagagttgattggagatcctccaccagaccag
ataaccaaaatctatggcccagacaaaagtcctgcttacgtgtttagaccggatgccaat
gcaggacaagtggcacggtaccatctcccaagccccttttacagagacttctcactcttg
ttctacattcaacccacttcagacaacgcaggggtgcttttcgctcttacggatgcctcc
cagtcaatcatctacgttggtgtgaagctttctgaggtgaaagatggaaaacagcagatc
atattctactatacggagcctggctctcaaaattccaatgttgcagccacattttctgtc
ccttccctggtcaatctgtggactcgttttgccctcagtgtgcgggattacaatgtggtg
ctttatatggagtgtgaagaatttaagacggttcatcttgagaggtcatctggtaagata
gagctggaagaaggagcaggactttttgtgggacaagctggaggtgcagatcctgataaa
taccagggcatcattgtagagttaaaaataaaagataatccgtgggctgctggttaccag
tgtgtcgaagaagatgatgactgtgatacgtgtggtggtagtggaagtggattagacata
aagcaaccatcttctgaaaaggaaagcgtgattcctctgttgtcaaacctgccactgccc
acacctgttacttcgcctaccattgccaaaaaaactgtgcagttagaggagactgaatat
attgagaggccaacatatgttcctgcaagtggggccaaaggtgaaaagggagaccttgga
gagaaaggggaccgtggcgccaaaggagatcctgggactggggttttgtcaaccagcggt
gataaaggagaaaagggagaaaagggggagctgggtgtaaagggaagtgcaggctttggc
tatccaggctctaaaggacagaaaggtgagcctggtactccagggcttccaggtccaatt
gggcccccaggacctcctggaaccatcatgaggcatgatggctctactgttgagcaccca
ggagccatgggcccaccaggacttcctggaaaagagggtcaacctggaaaggatggagag
cctggggatcctggtgaagatggcaaaccaggtgatgttggtccccaaggattccctggg
actccgggtgagcctggcctgaaaggtgaaaagggagaaccaagtgttggtgtgagaggt
cctcctgggcccccaggcccacctgggaaacctggattgagttccaaactggataagttg
acatttattgatatggagggctctggttttggaagtgagttggagtctttgcgaggtccc
aaaggaccacctgggcctccaggtcctcctggtgtacctggtttaccaggacaacctgga
agatttgggacaaatggcactgactttccaggcctcccaggccttcctggagttccaggg
agaaatggcaactcaggaatcccaggacctccggggccacttgggcctccaggaaaagat
ggcatccctggtcaacctggagaaaaaggagcaccgggagaaccaggtgaaatgggcttc
cctggacaaaagggcagccaaggagtgccaggattgccaggctcaccaggtgaacctggt
ctcgcaggacttcctgggccaatgggaccccgcggattgcctggtccccctgggccaggc
attgcagcagaatttgttgacatggagggctcaggattcccatttgtctctggtggtcct
ggaactcgtgggccagaaggtcctccggggcttccaggacttccaggacttccagggcct
ccaggacccaagggagatgaaggcatcattggactcccgggcttgccaggtgaaaaggga
tatcctggcttaccaggattagatggtcgccctggattagaaggtttcccaggaccacaa
ggacaaaagggtgaagaaggagggccagggcctaaaggtgaaaagggtcaagatggaata
ggacttcctggccctcctggaccaccaggaccagccgtgtacctgtctagtgaagataaa
attgtgcctgttttgccaggcccagagggaccaaagggacctaaaggtgacccaggaact
ccaggtttacaaggctatcctggactgaagggtgaaaaaggagagccaggagttataact
aggcctgatggaataatccttgcaaaaggagaaaagggtgaaccaggcccaagtggaccc
atgggaccagcagggtcacctgggcgatatggacggaagggagaacttggctttcctgga
agacctggccggcctggtatgaatggattgaaaggagaaaaaggtgacccagcagactta
agcggagcgctgggcttaaggggtcctcctggccccccagggcctccaggccccccaggc
agtcctgtaccagtttacgagaataatgcatttagtgatttgggccctccaggacctcca
ggattgcctggctaccatggtcagaaaggagaaaaaggtgaacagggtcttccaggacca
ccaggccagtttccttatgacctcagcagattcagctccaccttcaggggagaaacagga
gacaaaggtgatcctgggatgaaaggcgaaaagggtgaatcaggtgttggatcaagtgct
gctggacttccaggtccccaagggtatcctggtcttccgcctccaggcccccaaggacct
ccaggggcaggttttgaaggacatccagggccacaagggccgcctggccctcctggccct
ccaggacctccaggacccccttctttcccaggtccccacaggcaacatatcagtattcca
ggacccccaggacctccaggacccccaggacctccaggcattagtgacccaccttctttg
ggggtacggattttagcaacctaccagaacctgatgagcagagctcatgaggtgcctgaa
gggcagctccttttcatccaagatagagaagagctctacatccgtgtccacaatggcttc
agaagaatccttctggaggaaagaatatccattcctggctctggactggacaatgaagtc
tatgaaagatcttccagcatccactactctcatggagggacagcctcctctggatctcat
cgtccatttcagccacacttaccagtacatgcacgtccggaatataatgcttattctact
gccaaaccttggagaggggacgagagtgtggtcgacccacatcaccttcctgagcaacct
gccgtccacccacctcgtcagggagcacagcaagaatccttggaccatttctttcctaac
aaccgccagactgagactgctcctttggcagttcacacacatcatgacttccagccagct
ctgcatcttatagccctgaacactccccagagcggcagcatgcggggcatccgaggagct
gatttccagtgtttccagcaagctcggcaggttggactgtctggcactttccgagcattc
ctctcctctcggctgcaagacctctacagcatagtgcgcagagcagacaggagcacagtg
ccaattgtcaatctcagggatgaagtgttgtttaataactgggagaacctcttctcaggc
tctgaagctccattcagaactggggttcgcatcctctcctttgatggaagggatgtcctg
agagattctgcatggcctcagaagtacatgtggcacggctccgattccaagggacggcga
ctgacagagagctactgtgagacatggcggacggatgacaccgtggtgactggccaggct
tcctcgctggcatcaggcaagctgcttgaacagaagagcaacagctgcaggaacgccttt
atcgtcctgtgcatcgaaaacagcttcatgacatcttccaagaaatag
DBGET
integrated database retrieval system
