Candidatus Profftia tarda: PROFFT_A_01320
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Entry
PROFFT_A_01320 CDS
T07286
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ptf
Candidatus Profftia tarda
Pathway
ptf03420
Nucleotide excision repair
ptf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PROFFT_A_01320 (uvrD)
03430 Mismatch repair
PROFFT_A_01320 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptf03400
]
PROFFT_A_01320 (uvrD)
Enzymes [BR:
ptf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PROFFT_A_01320 (uvrD)
DNA repair and recombination proteins [BR:
ptf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PROFFT_A_01320 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PROFFT_A_01320 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
DYH2-5-8_CC
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAD6508130
UniProt:
A0A8E4GHQ1
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All DBs
Position
1:complement(272366..274312)
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AA seq
648 aa
AA seq
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MEFHYLLNNLNNKQREAVVATRSNILVLAGAGSGKTRVLVHRIAWLLSVEKCSPYSIMAV
TFTHKAANEMRNRLTNLIGTKQSGMWIGTFHSLANRLLRAHHADANLPYNFQVINSNDQL
LLIKRIVNMLHMQEKEYPTHQGMYYINNKKDDGLRPQYVKTHGNPVEEKWLNLYYAYQAA
CDRAGLVDFSELLLRTYELCLNKPQIIHDYRKRFTNILVDEFQDTNCMQYSWIQMLAGQT
GRIMIVGDDDQSIYGWRGAKIENIQRFMNDFPSSETIRLEQNYRSTNNIIQAANALIKNN
DKRFTKKIWTADNSGEKISLYRALNELDESIFVVNSIKSWQDMGGSLKDCAILYRKNIQS
HAFEEAMLQMEMPYHIYGKQRLCERKEIKNTLAYLRLISNSNDDDAYECIINTPSRGIGG
RTIDIIRQTASDRQLTLWQATHAIIQEKILNKRTSQALKDFVDLIQKMANKISDMPLHIQ
IDRVVQYSGLRQIYEQENNDKNQECINSLEELFIAMHQYKNDNENLLPLQSFIANSTFYA
NEKQIKKTQDAVQLMTLHSSKGLEFPLVFLVGMEEGLIPNQTYLKKDKCVEGERRLAYVG
LTRAMRKLTITYAENRNLYGKIVCYRPSRFIGEIPAGYVEEVYPRMQL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggaatttcattatttgcttaataatcttaacaataaacagcgggaagccgttgtagct
acgcgtagcaatattttagtacttgctggggcaggaagcggaaagactcgggtactagtg
catcgaatagcatggttactttcagtagaaaaatgttctccgtattctattatggcggtt
acttttacccacaaagctgctaatgaaatgcgcaatcgtcttactaacttaattggcact
aaacaaagcggaatgtggattggtactttccatagtttggctaatcgcctactgcgggct
caccatgcagatgcgaatttgccatataattttcaagttattaacagtaatgatcaattg
ctcttaataaaacgcattgttaacatgctacatatgcaagaaaaagagtaccctacgcat
cagggcatgtattacataaataataaaaaagatgatggattacgcccacaatatgtaaaa
acccatggaaatccggtagaagaaaaatggcttaatctatattatgcttatcaagcagct
tgtgatcgtgctggtttagtagatttctcagaacttctcctgcgaacttatgaactatgt
cttaataagccgcaaattattcatgattatcgcaaacgttttaccaatatcttagtagac
gaattccaggatactaactgtatgcagtattcctggattcaaatgttagctggtcagaca
ggcagaataatgatagtaggagatgatgatcaatcaatctatggttggcgaggagcaaaa
atagagaatatccagcgatttatgaatgattttcctagctctgaaactattcgtttagaa
caaaattaccgctcaactaataatattatacaagcagcaaacgccctgataaaaaataat
gataaacgttttactaaaaaaatatggacggcagacaacagtggggaaaaaatttctctt
taccgagcattaaatgaactagatgagtccatctttgtcgttaatagtataaagtcctgg
caagatatgggcggatctctgaaagactgtgctattctatatagaaaaaatattcaatca
catgcattcgaagaagctatgttacagatggaaatgccataccatatttatggtaagcaa
agattgtgcgaacgcaaggaaatcaaaaatacgttagcttatttacggctaatttctaat
agtaatgatgacgatgcttacgaatgcataatcaatacgccatcccgcggtataggaggt
cgtacgattgatataattcgccaaacagcgagcgatcggcaattgacgctctggcaagcc
acacatgcaattattcaagaaaaaattttaaataaacgaacgtctcaagctctcaaagat
tttgttgatctgattcaaaaaatggctaataagatttctgatatgccgctacatatacaa
atagatcgtgtagtgcagtattctggtttacgtcaaatttatgagcaggaaaataacgat
aaaaaccaggaatgtataaatagcctagaagagctttttatagcaatgcatcaatacaaa
aacgacaacgaaaatctacttccattgcaatcttttatagcaaattcaaccttttacgct
aacgaaaaacagataaaaaaaactcaagatgctgttcaactcatgaccttgcattcatct
aaagggcttgaatttcctctagtttttcttgtaggtatggaagagggattaatcccaaac
cagacgtacttaaagaaagataaatgtgtagagggagagcgccgtttagcttatgtaggt
ctcactagagctatgcgcaaacttacaataacttatgcggaaaatcgtaacttatatggc
aaaatagtgtgctatcgtccttcgcgttttattggagaaataccggcagggtacgtagag
gaagtatatccaaggatgcaattataa
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