Candidatus Profftia tarda: PROFFT_A_01850
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Entry
PROFFT_A_01850 CDS
T07286
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ptf
Candidatus Profftia tarda
Pathway
ptf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ptf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PROFFT_A_01850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptf03400
]
PROFFT_A_01850 (mfd)
Enzymes [BR:
ptf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PROFFT_A_01850 (mfd)
DNA repair and recombination proteins [BR:
ptf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PROFFT_A_01850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CAD6508703
UniProt:
A0A8E4EYJ2
LinkDB
All DBs
Position
1:371808..375263
Genome browser
AA seq
1151 aa
AA seq
DB search
MSKQYQFILPDRYDLPTRAGDILFLGQLTGSADALECAHISEKHSGPVILITSDIQSALR
LSNEIQQFTMQIVTTLSDWETLPYDSFSPHKDIISARLLSLYQLPTMKRGVFIMPVKSLM
QRVCPHEFLHRHSLIMQKGQKLSGDRLRIKLQKAGYRSVDQVVEHGEFATRGSLLDLYPM
GSDNPYRINFLNGKIDSLRIFDIDSQRTLNEVEYFSLLPAHEFPITETAIELFRSQWREN
LEVRRDPEHIYQQVSKGIWPAGIEYWQPLFFRNSLPPLFSYFPSSTLLINTADLKSAADR
FWLDLNQRYKNRCVDPMRPLLRPNKLWLCVDELFFLIKKWPCIQLKSEKLKQKNYHINLK
YHSLPELKVQKQNKNMLHALHVFTEISKDTIIFSVESEGRRETLIELLAIIKIKPDFITH
LQDAEEGKIYIMQGACERGFINPVLKLVLICENDLIGERFSRSQENKSNTNTSISNFSDL
IIDYPVVHVEHGVGRYSGMVTLTIGGIKGEYLILKYADDAKLYVPISSLFLLTRYSGVAI
ENAPLHKLGSDSWARARKKASEKVRDVAAELLDIHAIRATKTGFAFKKDCKSYQMFCEGF
RFEPTTDQKMAINSVLHDMCQPLAMDRLICGDVGFGKTEVAMRAAFLAVDNNKQVAVLVP
TTLLAQQHYDNFRDRFANWPVRIEMISRFRSVKEQKQIIRDTIDGKVDILIGTHKLLQAD
MQWSNLALLIVDEEHRFGVRQKERIKAICASVDILTLTATPIPRTLNMAMIGMRELSIIS
TPPARRLAVKTFVREYDTLLVREAILREITRGGQVYYLYNNVENIEKAAHRLSELVPEAF
LKIGHGQMRERDLERVINDFYHQRFNLLVCTTIIDTGIDLPNANTIIIERADHFGLAQLY
QLRGRVGRSFHQAYAYLLMPEPQSISADARKRLEAISSLDRLGSGFMLATQDLEIRGAGE
LLGDDQSGQISTIGFSLYMELLESAIDALKEGREPSLEDLVSKQTLIKIRLPSLLPDSYI
ADVGTRLSFYKRIASLSNIDELEDLKVELIDRFGLLPDTARNLIKSTKFRLDAMALGICR
IECHEQGGFFEFKEKNQVNLIFLVELLNKEPHLFRLDGPNKLNFIVDLSDSEVRLEFIAY
LLALLTKNKVT
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacaatatcaattcatattgcctgatcgttatgacctgccaacaagagctggc
gatatactttttttaggccagttaacgggttcggctgatgcgctggaatgcgcacatatc
tctgaaaaacattctgggccagtaatcctaattacttctgatatacaatcagcattgcgg
ttgagcaatgaaatccagcagtttactatgcaaatagttacaacactttccgactgggaa
acgttaccgtatgatagtttttcaccgcataaagatattatttcagctcgccttttaagt
ttgtatcaactacctactatgaagcgtggtgtttttatcatgccagtaaaaagtttaatg
cagcgtgtgtgccctcatgaattcctgcataggcattcattaataatgcaaaaaggtcag
aaattatctggggatagactgcgtataaagcttcaaaaagccggttatcgcagcgtggat
caggttgttgaacacggtgagtttgctacacgaggatcattgctagatctatacccaatg
ggcagtgataatccttatcgtatcaatttcctcaatggaaaaattgatagcttacgcata
ttcgatattgactcgcaacgcacccttaatgaagttgagtattttagcctgttacctgca
catgaattcccgattactgaaactgcaattgagttgtttcgtagtcaatggcgtgagaat
cttgaagtgcgacgtgatccagagcatatatatcagcaggttagtaaaggaatatggcca
gcaggtattgaatattggcagccgctattctttcgaaattcacttccgccactttttagt
tattttccatccagtacgttactaattaatactgctgatcttaaatctgcagcagatcgt
ttctggttagatctgaaccagcgttataaaaatagatgcgtcgatcctatgcgcccgctc
ttaagaccaaataaattgtggctatgcgttgatgagctgttttttttaataaaaaaatgg
ccttgtattcagttaaaaagtgaaaaactaaagcaaaaaaattatcatatcaatctaaaa
tatcactccctacctgaattgaaggttcaaaaacaaaataaaaatatgctgcatgccctg
catgtatttactgaaattagtaaagatactattattttttcagtagaaagtgaagggcgt
cgcgaaactttaatagaattgttagctattattaagatcaaacctgactttattacgcat
ctgcaagacgccgaagagggtaaaatttatattatgcagggcgcatgtgagcgtggattt
ataaatccagtgcttaaactagttctaatctgtgaaaatgatttaattggtgagcgcttt
agccgtagtcaagaaaataaaagtaatactaacactagtattagtaatttctccgacctt
attattgattatcctgtggtgcatgtagaacatggagtcggccgatattctggaatggtt
actctaacaataggtggaataaaaggagaatatttgattttgaaatacgcagatgatgca
aaattatatgtgccgatttcttctcttttcctactaactcgttattcaggagttgctatt
gaaaatgctccactgcacaaacttggtagcgattcttgggcaagagctcgcaaaaaagcc
tccgagaaagttcgagacgtagctgctgaactgttagatattcatgctatacgtgccact
aaaacaggtttcgcctttaagaaagattgcaaatcttaccagatgttttgtgaaggtttt
cggtttgaacccacaacagaccagaagatggcaattaactctgtactccacgatatgtgt
caaccattagccatggatcgtctaatatgcggggatgttggttttggtaaaaccgaggtg
gctatgcgtgctgcattcctcgctgtagacaacaataaacaggtagcggttttagttcct
actactttattagctcaacaacattacgataactttcgtgaccgttttgctaactggcca
gtacgtattgagatgatttctcgttttcgtagtgttaaagagcagaagcagataataagg
gatacaattgatggtaaagtagatattctgattggtacacataaacttttgcaggccgat
atgcagtggagtaatttagcgctattaatagttgatgaagagcatcgctttggagttcgt
cagaaggagcgtattaaagccatttgtgcttcggtagatattttgactctaactgctaca
ccaataccaagaacactaaatatggcaatgatcgggatgcgtgagttatctattatttcc
actccacctgcacgtcgtcttgcggtaaaaacttttgtacgagaatatgatactcttctt
gtgcgtgaagccattcttcgtgaaattactcgtggtggccaagtttattatttatataac
aatgttgaaaatatagaaaaagcagctcatcgcttatctgaacttgttcctgaagctttt
ctcaaaataggccatggacaaatgcgagagcgtgatttagagcgtgtaataaatgatttt
tatcatcagcgttttaatcttttagtttgcacgacaattatagatactgggattgatctt
ccaaatgcgaatactatcattattgaacgcgcagatcattttggtttagcacagctgtat
cagttacgtggtcgcgttggtcgttcatttcatcaggcctatgcttatttactaatgcct
gaaccacaatctatctctgccgatgcgagaaagcgtctagaggccatatcttctttagat
cgtttaggatcaggattcatgttagctacccaagacctagagattcgaggtgctggggag
ctattaggtgatgatcaaagcggccagattagcactattggcttttctctgtacatggaa
ttactagaaagtgcaattgatgctttaaaagaaggacgagagccttcattagaagatctg
gtaagcaagcagacgcttattaaaattcgtcttcctagcttgcttcctgattcttatatt
gcggatgtaggcactcgcttatctttctacaaacgcatagctagccttagcaatatagat
gagttagaagatttaaaagttgaactgattgatcgttttggtctgctaccggatacagct
cgtaatttaataaaaagcactaagtttcgtctagatgctatggcattgggtatttgccgt
atcgaatgtcatgaacaaggcggtttttttgagtttaaagagaaaaatcaggttaatcta
atattcctcgttgaattattgaataaagaacctcatctatttcgcttagatggacctaat
aaactaaattttattgtagatcttagcgatagcgaggtgcgtctagaatttattgcctat
ttattagctcttttaacaaaaaataaggttacatga
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