Candidatus Profftia tarda: PROFFT_A_02860
Help
Entry
PROFFT_A_02860 CDS
T07286
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptf
Candidatus Profftia tarda
Pathway
ptf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PROFFT_A_02860 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptf03019
]
PROFFT_A_02860 (rne)
03009 Ribosome biogenesis [BR:
ptf03009
]
PROFFT_A_02860 (rne)
Enzymes [BR:
ptf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PROFFT_A_02860 (rne)
Messenger RNA biogenesis [BR:
ptf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PROFFT_A_02860 (rne)
Ribosome biogenesis [BR:
ptf03009
]
Prokaryotic type
rRNA processing factors
PROFFT_A_02860 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
CAD6509666
UniProt:
A0A8E4EY94
LinkDB
All DBs
Position
1:571544..574699
Genome browser
AA seq
1051 aa
AA seq
DB search
MKRMLINATQHEELRVALVDGQRLYDLDIESLGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSYGRPNIKDVLREYQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRLELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDVIKKAAEGRSAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KKHIAALGRPDFSSKIKLYAGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALI
AIDINSARATRGGDIKETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTTVRHQREIE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHICPRCNGTGTVRDNESLS
LSILRLIEEEALKENTNEVHAIVPIPVASYLLNEKRESVSVIEKRQDGVKVIVVPHDQMQ
TPHYSVVRIRHGEGTSTLSYLLPQLHESESLIADEDNIIDRKRTEQPIRCTFSMDVETPV
LKVASDSAIKVIAQPTVEFGLVRRLFSALKNMFSVLDAVQKTVTQSRGPTEDMRNHNKDY
YDKTCRQNKNANYDISNYSDINFEDQSGNLRYLKQVADTKHKINNTATRKHDIQTLFAGS
LKNENQGDYSKDHQLVNQEVKLPNNQDTALETTAEEKNREDKNNTTLSNRRELTLKMPVK
PKNEDSLLALSQNAISPQLGLSESTQRQRHDENGKPSDSNQDRIGMPRRSRRSPRHLRVS
AQRRRRYRDDRYPLQSPMRLEFAAASPEMAFGKIWITYPTVRNSKSGIAKTQVLTEHLHK
NNNISRFAQKAIVPSTMNQAVPRTSMAHPANIRSVVNYVISTSIKAVTPESIKVNEVVTV
TPENIKPSVTKSAAFKELAHKKYVITESDSFVTEDARRKMVEKVVDSSYMADIESDIIPI
KDAFFKKSTVHILGIDKDTIETNRIKSLMLTEAKSQNVATAPITKVPAEPQDKNYVSIMS
NRKRPNLDLLSKNSAGAHAAASHSTAPPTKP
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcatgaagagttgcgtgttgcccttgtagac
gggcagcgtttgtatgatttagatattgagagtttaggtcacgaacagaaaaaagcaaat
atctacaagggtaaaataacccgtattgagccaagtttggaagctgcttttgtagattac
ggtgctgaaagacatggttttctccctctcaaagaaattgcccgtgagtactttcctagc
aattactcgtcttatggtcgcccaaacataaaagatgttttgcgagaatatcaggaagtt
attgttcaggttgataaagaagagcgcggcaataaaggtgcagcattaacaacatttatt
agcttagctggcagctatttagtattgatgcctaataacccacgcgcaggtggtatttct
cgtcgcatagaaggtgaggaccgtctagaacttaaagaagcccttgcttctcttgaacta
ccggatgggatgggtttgattgttcgtacggcaggagttggtaaatctgctgaagcttta
caatgggatctatcgttccgtctcaaacattgggatgttattaaaaaagctgccgaagga
cgttctgcgccgtttttgattcatcaagaaagcaatgttattgttcgcgcatttcgcgat
tatctgcggcctgatattggtgaaatattgattgataaccccaagattcttgatctagca
aaaaaacatattgctgctctagggcgtcctgattttagtagcaaaatcaaactatatgct
ggtgaaattccactatttagtcattaccagattgaatctcagattgagtctgcatttcaa
cgtgaagtgcgtctgccttccggtggttccattgttattgattctactgaagctttaata
gccatagatattaattctgctcgtgcaacacgcggaggcgacattaaggaaacagcattt
aatactaatcttgaagctgctgatgaaattgctcgtcagctgcgtctacgcgatcttggc
ggtctgattgtgatcgatttcattgatatgactactgtacgccatcaacgcgaaattgag
aatcgtctacgtgatgctgttcgtcaggatcgtgcgcgtattcagataggtcgaatttcc
cgttttggtttgcttgaaatgtctcgtcaacgtctcagcccctcactaggtgagtcgagt
catcatatttgtcctcgctgtaatggtactggtactgtgcgcgataatgagtccttgtct
ctctctattcttcgtcttattgaggaggaagcgctaaaagaaaataccaacgaagtacat
gctatagttccaattccagttgcctcttatctattaaatgagaagcgagagtctgttagt
gttattgagaaacgtcaagatggcgtaaaagttatcgttgtacctcacgatcagatgcaa
acaccgcattactctgtggtgcgtataagacatggtgaagggaccagcactctaagttac
cttttgccccagttgcacgaatcagagagcctgattgctgacgaagataatattattgat
cgaaagcgcactgaacaacctataaggtgtactttttctatggatgttgaaactccagtt
ctaaaagttgccagtgatagtgctatcaaagtaattgctcagcccacggtagagtttggt
ttagtaagacgacttttctctgcgctaaaaaatatgttctcagttttagatgcagtgcaa
aaaacagtgacccaatctagaggtcctacagaagatatgagaaatcataataaagattat
tatgataagacttgccgtcagaataaaaatgccaattatgatatatctaactattctgat
attaattttgaagatcaatctggcaatcttcggtacttaaaacaagttgctgatactaaa
cataaaataaataataccgctacccgaaagcatgatatacaaacgctatttgctggctca
cttaagaatgagaatcagggtgattacagtaaagatcatcagcttgttaatcaggaagta
aaattaccgaataatcaagatacagctctagagactacagcagaagaaaagaacagagaa
gataagaataatacaactctaagtaatagacgtgaattaactctaaaaatgcctgttaaa
cccaagaatgaagattcacttttagcgctatctcaaaatgctatctctcctcaattaggt
ctttctgagtccactcaacgacagagacatgatgagaatgggaaaccttctgatagcaat
caagatcgaattggtatgcctcgtcgttctcgtcgctcaccgcgccatctgcgtgttagt
gctcaaaggcgtcgtcgataccgtgatgatcgttatccgttgcagtcgccaatgcgactt
gagttcgctgcagcatctcctgagatggcattcggtaaaatctggatcacctatccaaca
gtcaggaattcaaagtctggaatagctaagacacaagtattaacggaacacttgcataaa
aacaataatatctctcgttttgcacaaaaagctatagttccttcaactatgaatcaagct
gtacctagaacttccatggcgcatccagctaatatccgatcggtcgttaattatgttata
tcaacatctattaaagcagtaacgcctgaatctataaaagttaacgaagtagtaacagta
actccagaaaatattaaaccatctgtcactaaaagtgcagcttttaaagaattagctcat
aagaaatatgttattacagaatccgatagttttgtgacagaagatgctagaagaaaaatg
gttgagaaggttgttgattcttcatacatggcagatatcgaatcagatatcatccccatt
aaagatgcattttttaaaaaatctacagtgcatattttgggtatcgacaaagatactatc
gaaactaataggattaagtctctcatgttaactgaggctaaatcacagaacgttgcaaca
gcacctataactaaagtaccagcagaacctcaggataaaaattatgtttcaattatgagt
aatcgcaagcgacctaatctagatttgctgagtaaaaattctgctggtgctcacgcagcg
gcaagtcactcaacagcaccgccaaccaagccgtga
DBGET
integrated database retrieval system
