Candidatus Profftia tarda: PROFFT_A_03520
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Entry
PROFFT_A_03520 CDS
T07286
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptf
Candidatus Profftia tarda
Pathway
ptf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PROFFT_A_03520 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptf03019
]
PROFFT_A_03520 (deaD)
03009 Ribosome biogenesis [BR:
ptf03009
]
PROFFT_A_03520 (deaD)
Enzymes [BR:
ptf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PROFFT_A_03520 (deaD)
Messenger RNA biogenesis [BR:
ptf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PROFFT_A_03520 (deaD)
Ribosome biogenesis [BR:
ptf03009
]
Prokaryotic type
rRNA helicases
PROFFT_A_03520 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DRTGG
Cas3-like_C_2
CMS1
LisH_WDR26
Motif
Other DBs
NCBI-ProteinID:
CAD6510215
UniProt:
A0A8E4F028
LinkDB
All DBs
Position
1:684722..686587
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AA seq
621 aa
AA seq
DB search
MRHVYMTKLENSFAFLGLAQPIIQALNDLGYEKPSPIQEECIPHLLKGRDVLGMAQTGSG
KTAAFSLPLLNNIKPGLKAPQILVLAPTRELAIQVSQAMANFARHIKAINVVAIYGGQRY
DLQLRALRQGPQIVVGTPGRMLDHLKRGTLNLSHLSGLVLDEADEMLRMGFIEDVEAIMA
QIPAEHQTALFSATMPEAIRRITRRFMKDPKEVRIQSSINNRPDISQSYWSVFGIRKNEA
LVRFLEAEDFDAAIIFVRTKNATLEVSEALERSGYTSAALNGDMNQALREQTLGRLKDGR
LDILIATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENGERR
LLRNIERIMKLNIPEVEIPNAALLGQRRLAKFAAKVQKQIESSDLDKYRDLLTKLQPADK
LDLETLAAALLKMARGERPLIPPPDLIIERSQRREFNDRDIRNGNHDKRRNTKRREHRED
MALYRIEVGRDDGVEVRHIVGAIANEGDISSRHIGHIKLFACHSTIELPKNMPNDLLSHF
NCTRILNKPLNMRLMGDAPPRTYRENTVSNNNTSNFISGERRNFRNRDDKHHRYNRYSNN
KKDRISAKNHDDAPPTRGHTN
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaggcacgtgtacatgactaagttagagaattcttttgctttcctagggttagctcaa
ccaatcatccaagcactaaacgaccttggctacgaaaaaccatcacccatacaagaagaa
tgcattcctcaccttttaaaaggtagagatgttctaggtatggctcaaacaggttcgggt
aaaactgctgccttttcgttgccactattgaataatattaaaccaggactaaaagcacca
cagatactagttttagctccaactcgtgagctagcaattcaagtttcccaggcaatggct
aactttgctagacatataaaagctataaatgttgttgctatttacggtggacagcgatat
gacttacagctgcgtgccctgcgtcaagggccacagattgttgttgggaccccaggcaga
atgcttgaccacttaaagcgtggcacactaaatctttctcatctaagtggtttggtttta
gatgaagctgatgaaatgctacgcatgggattcatcgaagatgttgaagctataatggca
cagattccagcagaacatcagacagctttattttctgcaactatgcctgaagcaattcgt
cgtatcacgcgacgctttatgaaagatcctaaggaagtacgaattcagtctagcatcaac
aatcggcctgatattagtcaaagctactggagtgtttttggtatccgtaaaaacgaagca
ttagttcgctttcttgaagctgaagattttgatgctgcaatcatattcgtacgcactaaa
aacgctactctagaagtttcggaagccttggaacgtagtggttataccagtgctgctcta
aatggtgacatgaaccaagccctgcgtgagcagactttaggacgattaaaagacggtcgt
ttagatattctaattgctactgatgttgctgcgcgcggtctagatgtagaccgcattagt
cttgttgtcaactatgatattccgatggactcagagtcttatgttcatcgtataggccgc
acaggacgtgcaggacgtgcaggacgtgcattgctatttgttgagaacggcgaacgtcga
ctgctgcggaatattgaacgcataatgaagctcaatattccagaagtagaaattcctaac
gcagcacttttgggtcaacgtcgtttggctaagtttgccgctaaagtacaaaaacaaata
gaaagtagtgatcttgataaataccgtgatctgctaactaaactgcaaccggcagataag
ttagatttggaaactttagcagcagctctacttaagatggcacgaggcgaacgccccctt
ataccgccaccagatctaatcatagaacgtagtcagcgtcgtgaattcaacgatcgtgat
attcgcaatggcaatcatgataaacgtagaaacacgaaacgccgtgaacatcgtgaggat
atggctctttatcgtatagaagttggccgtgatgatggcgttgaagtacgtcatattgtt
ggtgctattgctaacgagggtgatattagtagtcgtcatattggtcatataaaactattt
gcttgtcactcaactatcgaattgcctaagaatatgccaaatgatttattatcccatttt
aactgcactcgcattctcaataagcctctaaacatgaggttgatgggtgatgcaccacca
cggacatatcgtgaaaatacagtaagtaataataataccagcaactttatcagcggtgag
cgtcgtaattttagaaatcgtgatgataaacatcaccgttataatcgatattctaataat
aaaaaggatcgcatttcagctaaaaaccatgatgatgcaccgccgactcgtgggcatact
aattaa
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