Candidatus Profftia tarda: PROFFT_A_03620
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Entry
PROFFT_A_03620 CDS
T07286
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ptf
Candidatus Profftia tarda
Pathway
ptf03030
DNA replication
ptf03430
Mismatch repair
ptf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ptf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PROFFT_A_03620 (dnaE)
03430 Mismatch repair
PROFFT_A_03620 (dnaE)
03440 Homologous recombination
PROFFT_A_03620 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptf03032
]
PROFFT_A_03620 (dnaE)
03400 DNA repair and recombination proteins [BR:
ptf03400
]
PROFFT_A_03620 (dnaE)
Enzymes [BR:
ptf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PROFFT_A_03620 (dnaE)
DNA replication proteins [BR:
ptf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PROFFT_A_03620 (dnaE)
DNA repair and recombination proteins [BR:
ptf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PROFFT_A_03620 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAD6510306
UniProt:
A0A8E4H417
LinkDB
All DBs
Position
1:complement(701041..704526)
Genome browser
AA seq
1161 aa
AA seq
DB search
MAAPHFIHLRVHSDYSMIDGLAKVEALVKKAVSLGMPAFAMTDHTNMCGLIKFYDAAYRA
GIKPIIGADVLIKNDHFLGNEISQLTILSANNQGYKNLTLLISGAYRRGYGIEGPVINQD
ALIKHREGLILLSGGRQGDVGKMLLRGNQLLVHKCVDFYQQYFPDSYYLELIRTGRVNEE
IYLKLAVALAEECSLPVVATNDVRFLESTDFDAHEIRVAIHNSVTLDNEKRPRQYSEQQY
MRSEEEMNRIFADLPEGLENSVEIAKRCNVTVILDKYFLPLFPTGAMSTENFLIVKSRGG
LEDRLAFLFPNKEERSQNRIQYDQRLESELKVINNMGFPAYFLIVMEFIQWSKDNGVRVG
PGRGSGAGSLVAYALKITDIDPLAFDLLFERFLNPERISMPDFDVDFCMEKRDLVIEHVA
EIYGRDEVSQIITFGTMAAKAVIRDVGRVLGYPYSFVDRISKLVPLEPGITLKEAFEAEP
QLSKIYEEDEEVRTLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDSEGNHPLT
QFDKNDVERAGLVKFDFLGLRTLTIIDWALNMINARQDKRADPKIDISAIPLNDKRSFEM
LQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGRE
EVFYPDAQRQHLLLKPVLESTYGIILYQEQVMQIAQVLAGYTLGEADILRRAMGKKKPSE
MAKQRIVFKKGAERMGINGDLSMKIFDLLEKFASYGFNKSHSAAYALLSYQTLWLKAHYP
AEFMAAVMTADMDNTEKVVSLVDECCLMGLTVLPPDINNGHYQFHVNDKGGIVYGIGAIK
GVGSGAIEAIINARNKGGSFKELFDLCARIDTKKLNRRMLERLIMSGAFDRLGPHRAALI
NSLKSALKASDQHVRAESIGQIDMFGVLPQDTDQVEASYKRHAPWPAQVVLDGERETLGL
YLTGHPINQYLKEIDKYADGIHIKDMRPTEKGKMTTAAGLVVAAKIKTTKRGNRIGLCTL
DDRSGRLEVIIFNEALDKYQHLLERDRILIVIGQIISDNFRGGMKMIARQIMDIIEAREK
YVSKLAIYLTDRQIYDQILQRLRDLLESYHPGTIPVELYYQRNNARAKLRFGVTWRVTPT
ERLLVDLRTLLGNEQVELKFD
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccacattttatacatttgcgagttcatagcgactattcaatgatagatggg
ctagcaaaagtggaagcattggttaaaaaagcagtttctttgggtatgccggcttttgcc
atgactgatcatactaatatgtgtggattgataaaattttatgatgcagcatatagagct
ggtatcaaacctatcattggcgctgacgtgctgataaaaaatgatcattttttaggtaat
gagatttctcaactgactattctatctgctaacaatcaaggatataaaaaccttactcta
cttatttcaggtgcttaccggcgtggatatggtatcgaaggtccagtaattaaccaagat
gctctaattaagcatcgtgaaggactaattttgttatctggtgggcgtcaaggagatgta
ggcaaaatgttgttgaggggcaaccagttgttggtacataaatgtgttgatttctatcaa
caatattttcctgatagttattatctagaattaattagaactggtcgtgtaaacgaagaa
atttatttaaaacttgcagtagcactagctgaagagtgcagtcttccagttgttgcgacc
aatgacgtacgttttttagaatctactgattttgatgcgcatgaaatacgcgttgctatt
cataatagcgtaactttagataacgaaaaacgccctagacaatatagcgaacaacagtat
atgcgcagcgaagaagaaatgaatagaatcttcgctgatcttccagaaggattagaaaac
agtgtagaaatcgctaagcgttgtaatgttacagttatcctagataaatacttcttgccg
ctattcccgactggtgcaatgtctacggaaaacttcttaattgttaaatctaggggtggc
ttagaagaccgcttagcattcttattcccgaataaagaagaacgctctcagaatcgtata
cagtacgatcagcgccttgaaagtgagctaaaagttatcaacaatatgggattccccgcc
tatttcttaatcgttatggaattcattcaatggtcgaaagacaacggtgtgcgggtgggt
ccaggtcgtggttctggcgcgggttcattagttgcctatgcgctaaaaataactgatata
gacccacttgcatttgatttgctttttgaacgattcctaaatccagaacgcatatcaatg
cctgattttgatgttgatttctgtatggagaaacgtgaccttgtaattgaacatgtggct
gaaatttatggtcgtgatgaggtatcccagattattacttttggcaccatggcagcgaaa
gcggttatccgcgatgttggacgtgttttaggctatccttatagttttgtagatcgcata
tcaaaattggttccattagagcctggaataacactaaaagaagcttttgaagccgaacct
caattgtctaaaatttacgaagaggatgaagaagttagaacactgattgatatggctcgt
aaactagaaggtgttacccgtaatgctggtaaacatgctggtggagtagttattgcacca
acaaaaattactgactttgcgccgctgtattgcgattccgaaggcaatcatccactgact
cagtttgataaaaatgatgtagagcgcgccggactcgtcaaattcgattttttaggccta
cgcactcttacaattattgattgggcattgaatatgattaatgctcgtcaggataaaaga
gctgatcctaagattgatatttctgctataccgcttaacgataaaagaagttttgaaatg
ctgcaacgatcagaaactacagcagtatttcagctggaatcacgcggcatgaaagatttg
attaaacgactaaaacccgattgtttcgaagatatgatcgccttagtcgcactctttcgt
cctggacctttgcagtcagggatggtagacaactttattgatcgtaaacacggacgtgaa
gaagttttttacccagatgctcagcgacaacatctattgttaaaacctgtactagagtca
acttatggaattatcctgtatcaggagcaggtaatgcagatagcacaagttttagctgga
tatacgctaggtgaagcggatatattgcgtcgtgcaatggggaaaaaaaaaccttcagag
atggcgaagcaacgcatagtttttaaaaaaggcgcagagcggatgggtattaacggtgat
ttatcaatgaaaatattcgacttactggaaaagttcgctagttatggatttaacaaatcg
cactctgctgcttatgcattgctctcataccagactctatggttaaaagcacactatcca
gcagagtttatggctgcggtaatgaccgcagatatggataatactgaaaaagtagtaagt
ttggtagatgaatgttgcttgatgggacttacagtactgcctccagatattaataatgga
cattatcaatttcacgtgaatgataaaggtggtattgtttacggtataggtgctattaaa
ggagtgggttcaggggctattgaagcaatcattaatgcccgcaacaaaggtgggtctttt
aaagaattatttgatttatgtgccagaatagatactaaaaaattaaaccgtcgtatgtta
gaaagattgattatgtccggagcatttgatcgattaggacctcatcgcgctgctctaatt
aactcactaaaaagcgcattaaaagcatctgatcagcatgtcagagctgaatccattggt
cagatagatatgtttggtgtattgcctcaagacactgatcaagtagaggcatcatataag
agacatgctccatggcctgctcaggtggtattagatggcgagcgtgaaactttaggctta
tatctaactgggcaccctataaaccaatatcttaaggaaatagataaatatgcagatggc
atacatataaaagatatgcgtccgacagaaaaaggtaaaatgacaactgctgctggatta
gtagtggcagctaaaatcaaaactactaagcgcggcaatcgcattggactgtgtacatta
gatgatcgttctgggcgcctagaagttataatatttaatgaggcattagataagtaccaa
cacttactagaaagagatcgcatcctcatagtaataggacaaattatctctgataacttt
agagggggcatgaaaatgattgctcgtcagatcatggatatcattgaggcgcgtgagaaa
tatgtgagtaagctagctatttatttaactgatagacaaatttatgatcaaatattacag
cgtctccgcgacttgttagaatcatatcatccaggaactattccagtagaattatactat
caacgtaataatgcacgcgctaaattaagatttggggtgacctggcgagtaaccccaaca
gaacgtctgctagttgatctgcgtactcttttgggtaatgaacaagtagaacttaaattt
gactaa
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