Candidatus Profftia tarda: PROFFT_A_04010
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Entry
PROFFT_A_04010 CDS
T07286
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptf
Candidatus Profftia tarda
Brite
KEGG Orthology (KO) [BR:
ptf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PROFFT_A_04010 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptf03021
]
PROFFT_A_04010 (rpoD)
Transcription machinery [BR:
ptf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PROFFT_A_04010 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
CAD6510693
UniProt:
A0A8E4EYU1
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All DBs
Position
1:757206..759056
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AA seq
616 aa
AA seq
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MKYGYSFMEQNPQSQLKILVNKGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGI
QVMEKAPDADYLMLAENIADEDATEAAVQVLSSVESEIGRTTDPVRMYMREMGTVELLTR
EGEIDIAKRIEEGINQVQRSVTEYPEAITYLLEQYDHVQSEEYRLSDIITGFVDPNAEEY
FSATATNVGSDLSSEELNEEDEDNENEENTDHHNIDEELARQKFSELREQYQKTHIAIKA
HGRKHEVVEEEILNLSEVFKQFRLVPKQFDHLVNNMRQMMDRVRTQERLIMKLCVEQSKM
PKKNFITLFTGNETNTSWFDAALAMAKPWGEKLKFVRKDVELSLNKLLQIEEETDLTIKQ
VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELAERMIMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLDLPLDSATS
ESLRSATRDVLSGLTIREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEVLRSFLDD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
ctgaagtatggatatagttttatggagcaaaacccgcagtcacagctgaaaattcttgtt
aacaagggtaaagagcaaggctacttaacctatgctgaggttaacgaccatttaccagaa
gacataatagactccgatcaaattgaagatatcatccagatgattaatgacatgggtatt
caagtcatggagaaagcacctgatgctgattatttaatgctagcagaaaatattgctgac
gaagatgcaacagaggctgctgtgcaagtactatcaagtgtagaatccgaaataggccgc
actactgatcctgtgcgcatgtatatgcgggaaatgggaactgtagagcttctaacacgt
gaaggcgaaatagacattgctaaacgcatagaagaaggaataaaccaggttcagcgctca
gtgacggagtacccagaagcaattacttatttgcttgagcagtatgatcatgttcaatca
gaagaatatcgtctatctgatataattaccggttttgtagatcctaacgcagaagaatat
ttttcagcaactgcaactaacgtaggttcagatctctcttcagaagagctcaatgaagaa
gacgaagacaatgaaaacgaagaaaataccgatcaccataatattgatgaagaattagct
cgccaaaagttttctgaactccgtgaacaatatcaaaaaactcatatagctattaaagct
catgggcgtaaacatgaggtagtagaagaagaaattctaaatctttcagaagtttttaaa
caattccgtctagtgccaaaacaattcgatcacctggtcaacaacatgcgtcagatgatg
gatcgtgtgcgaacccaagaaagattaattatgaaactctgcgtcgaacagagcaaaatg
ccaaagaaaaattttattaccttgttcacgggcaatgaaactaataccagctggtttgat
gctgctttagctatggctaagccatggggcgagaagctcaaattcgtacgtaaagacgtt
gaactgagtctaaacaaactacttcaaatagaagaagaaacggatcttactataaaacaa
gtaaaagatattaatcgtcgaatgtctataggtgaagcaaaagcacgtcgtgcaaaaaaa
gaaatggttgaggcgaacttacgcctagttatctctattgccaagaaatatacgaatcgt
ggcttgcagttcttagatcttattcaagaaggtaacatcggccttatgaaagcagttgat
aaatttgaataccgtcgtggttacaagttttctacttatgcaacatggtggatccggcag
gctattactcgttctatcgcagatcaggcccgaaccatacgtatccctgttcatatgata
gagactattaacaaacttaatcgcatttctcgtcaaatgctacaagagatgggccgtgaa
cctacgccggaagagctagctgaaagaatgataatgccagaagataaaatacgtaaagtt
ctaaaaatagctaaagaaccgatttcaatggaaactccgatcggtgatgatgaagattca
catttaggtgattttattgaagatacaactttagatctcccactagactctgctacttct
gaaagcctgcgctctgctacccgtgatgttctatcgggtttaacaatccgcgaggcaaaa
gtattgcgcatgcgatttggtatcgacatgaacacagaccatacgttagaagaagtaggc
aaacaattcgatgttacacgtgaacgcattcgtcagatcgaagcgaaggcgctgcgcaaa
ttgcgccaccccagtcgttctgaagtcttgcgtagcttcttagacgattaa
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