KEGG   Panthera tigris altaica (Amur tiger): 102953202
Entry
102953202         CDS       T02988                                 
Symbol
ALYREF
Name
(RefSeq) Aly/REF export factor
  KO
K12881  THO complex subunit 4
Organism
ptg  Panthera tigris altaica (Amur tiger)
Pathway
ptg03013  Nucleocytoplasmic transport
ptg03015  mRNA surveillance pathway
ptg03040  Spliceosome
ptg05014  Amyotrophic lateral sclerosis
ptg05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ptg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102953202 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    102953202 (ALYREF)
   03015 mRNA surveillance pathway
    102953202 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    102953202 (ALYREF)
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    102953202 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptg03019]
    102953202 (ALYREF)
   03041 Spliceosome [BR:ptg03041]
    102953202 (ALYREF)
Messenger RNA biogenesis [BR:ptg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     102953202 (ALYREF)
    TREX complex
     102953202 (ALYREF)
Spliceosome [BR:ptg03041]
 Complex C
  Other components
   EJC/TREX
    102953202 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102953202 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 102953202
NCBI-ProteinID: XP_015391664
LinkDB
Position
Un
AA seq 307 aa
MPRLRNPEGRVLESRSRVWVRSCVFFPLQPKQLPDKWQHDLFDSGFGGGAGVETGGKLLV
SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP
LDGRPMNIQLVTSQIDTQRRPAQSVNRGGMTRNRGSGGFGGGGGTRRGARGGSRGRGRGP
ARARPWWCVWEAWARRTAIGQRLSTADQMDQATPSAQTRRRVALFLALGLHGSSVVRPEA
RNPAEAGAADSLSERRASHTPVAPWDPLWVCAPQEEDRFVLAFGELTVRCRKPTRETGMR
PDNPHRS
NT seq 924 nt   +upstreamnt  +downstreamnt
atgcccaggctgagaaatccagaggggagagtcctggagagccgctcacgggtctgggtc
cgttcttgtgttttctttccccttcagcccaaacaacttcctgacaagtggcaacacgac
cttttcgacagcggtttcgggggcggcgcaggcgtcgagacgggtgggaaactgctggtg
tcaaatctggattttggagtatcggacgctgatattcaggagctcttcgctgagttcgga
actctgaagaaggcggccgtacactacgatcgctcagggcgcagtttaggaacagctgat
gtgcactttgaacggaaggcagatgccctgaaggcgatgaagcagtacaacggcgtcccc
ctggatggccgccccatgaacattcagctcgtcacgtcacagattgacacacagcggaga
cccgcacagagcgtaaacagaggcgggatgaccagaaaccgcggttccggaggcttcggg
ggcggtggcggcacccggagaggcgctcgcggaggcagccggggcagggggagaggaccg
gcccgcgcccggccctggtggtgtgtctgggaggcctgggcacgccgaactgcgattggc
cagcgcctgtcaacagccgaccagatggatcaggccaccccctcggcccagacccgacgc
cgggtagccctcttcctggccctcggtctgcacggaagctcagtggtgcgtccagaagcg
cgaaaccccgcagaggccggggctgcggactccttgagcgagcgtcgcgcttcgcacacc
cctgtggcaccctgggacccgctgtgggtctgtgctcctcaagaagaggacaggtttgtt
cttgccttcggggagctgacggtccgatgcaggaaaccgacccgggagactggaatgcgg
cccgataaccctcataggagctag

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