Panthera tigris altaica (Amur tiger): 102966524
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Entry
102966524 CDS
T02988
Symbol
RTCB
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptg
Panthera tigris altaica (Amur tiger)
Brite
KEGG Orthology (KO) [BR:
ptg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptg03016
]
102966524 (RTCB)
Enzymes [BR:
ptg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
102966524 (RTCB)
Transfer RNA biogenesis [BR:
ptg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102966524 (RTCB)
Prokaryotic type
tRNA splicing ligases
102966524 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
102966524
NCBI-ProteinID:
XP_007096561
LinkDB
All DBs
Position
Un
AA seq
491 aa
AA seq
DB search
TRNRRLRSALTQKSQKRPVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMKQIGNVA
ALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDE
SDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHC
EEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQ
VCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAGA
GXXXVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHR
KGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRAL
SRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKA
IKLRPIAVIKG
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
acacgaaatcggcgcttgcgaagcgctttgacacagaagtctcaaaaacgccccgttgaa
ggagttttctatgtgaatgatgctctggaaaaattaatgtttgaggaattaagaaatgcc
tgtcgaggtggtggtgttggtggcttcctgccagccatgaaacaaattggcaatgtggca
gccctgcctgggattgttcatcgatctatcgggcttcctgatgtccactcaggttatggg
tttgctattgggaacatggcagccttcgatatgaatgaccccgaagcagtggtatcccca
ggtggtgtcggatttgacatcaactgcggtgtccgcttgctcagaaccaatttagatgaa
agcgatgtccagccagtgaaggagcagcttgcccaggctatgtttgaccacattcctgtt
ggggtgggatcaaaaggtgtcatccccatgaatgccaaagacttggaggaggccttggag
atgggtgtggactggtccctgagggaaggctacgcctgggctgaagacaaggagcactgt
gaggagtacggaaggatgttgcaggctgatcccaataaggtctccgcaagggctaagaaa
agaggccttcctcagttggggaccctgggagcaggaaaccactatgcagaaatccaggtt
gtggatgagattttcaatgagtacgctgctaagaaaatgggcatcgaccataagggacag
gtgtgtgtgatgatccacagcggaagcagaggcttgggccaccaagtagccacagatgca
ctggttgctatggaaaaagccatgaagagagacaagatcatagtcaacgaccggcagttg
gcttgtgctcggatcgcttccccagagggtcaggactacctgaagggaatggcaggtgct
gggngnnnnngggtcaaccgctcttccatgaccttcttaacccgtcaggcttttgccaag
gtcttcaacacaactcctgatgacttggacctacacgtgatctatgatgtttctcacaat
attgccaaagtcgaacagcacgtggtggatggaaaggaacggacactgttggtgcacagg
aagggatccacccgagcttttcctcctcaccatccccttattgctgttgattaccaactc
actggacaaccagtgctcattggtggcaccatgggcacctgtagttacgttcttactggc
actgaacagggtatgactgagaccttcggaacaacttgtcacggagcgggccgtgcatta
tcccgagcaaaatctcgacgtaatttagatttccaggatgtcttggacaaactggcagat
atgggaatcgcaatccgcgttgcctcgcccaaactggttatggaagaggctcctgagtcc
tacaagaatgtgactgacgtggtgaacacctgccatgatgctgggatcagcaagaaggcc
attaaactgagaccaattgccgtgatcaaaggatag
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