Panthera tigris altaica (Amur tiger): 102966954
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Entry
102966954 CDS
T02988
Symbol
SMG5
Name
(RefSeq) SMG5, nonsense mediated mRNA decay factor
KO
K11125
protein SMG5
Organism
ptg
Panthera tigris altaica (Amur tiger)
Pathway
ptg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ptg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102966954 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptg03019
]
102966954 (SMG5)
03032 DNA replication proteins [BR:
ptg03032
]
102966954 (SMG5)
Messenger RNA biogenesis [BR:
ptg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102966954 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
102966954 (SMG5)
DNA replication proteins [BR:
ptg03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
102966954 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
102966954
NCBI-ProteinID:
XP_015395604
LinkDB
All DBs
Position
Un
AA seq
1088 aa
AA seq
DB search
METPFRRQTPSSRRGGGGSPTFGKELPSSLLALQKKHWRTSPFPKVGVQLGTRLRVIALV
ILILLRSGSFLEPPPSQLGLTGGDAFAQAAYICAPGYPCLGLDCVPVFPSRAVVEAVHRL
DLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLI
KTNKKHIHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCK
KPVSASGKEMDWAQMACHRCLMYLGDLSRYQNELAGVDTELLAERFYYQALSVAPQIGXX
FNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKL
SPSRKRCKDIKRLLVNFMYLQSLLQPRSSPVDAELTSLCQSVLEDFNLCLFYLPSSPTLS
LASEGEEDYEGGYAFLPDLLIFQMLIVCLMGVHSLKRAGSKQYSAAIAFTLALFSHLVNH
VNIRLQAELEEGENPVPAFQSDGTDEPLEKEEAPGPEPPPAAPQAGEVRKSRKFSRLSCL
RRRRHPPRAGDDSDLSEGFESDSSHDSARASEGSDSGSDKSLEGGGTAFDAETDSEMNSQ
ESRSDLEDIEDEEGTRSPALEPPRPRSEAPESLNGPLGPREASIASNLQAMSTQMFQTKR
CFRLAPTFSNLLLQPPAEAPTAASRRPCVNGDADKPSEPASDDGSEPEGSESSGRSCRNE
RSVQEKLQVLAAEGLLPAVKVFLDWLRANPELIVVCAQSSQSLWNRLSVLLNLLPAAGEL
QESGLALCPEVQDLLEGGELPDLPSSLLLPEDTALRNLPPLRAAHRRFNFDTDRPLLSAL
EESVVRICCIRSFGHFVARLQGSILQFSAEAGIFVSIAQSEQEGVLPQAQAQLLMAQEEA
RRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCHHLPVIRQLATSGR
FIVIIPRTVIDGLDLLKKEHPGARDGIRYLEAEFKKGNRYIRCQKEVGKSFERHKLKRQD
ADAWTLYKILDSCKQLTLAQGAGEEDPSGMVTIVTGLPLDDPSALSGPMQVGHRGTWGAG
VNGEGVPE
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggagacaccctttcgacgtcagacgccatccagcaggagaggaggcggagggtcccca
acgtttgggaaggagctgcccagctccctgctggctctgcaaaaaaagcattggaggacg
tcaccctttccgaaagtgggggtgcagctgggcacaaggcttcgggtaatagctctggtc
atcctgatccttctcagatctggttcttttctcgagccgccaccctcacagctcggactg
accggaggtgatgcgtttgcacaggcggcctacatctgtgcccctgggtacccctgcctg
ggattggactgcgtgcctgtgtttccctccagggctgtggtggaggccgtgcatcgactt
gacctcatcctttgcaacaaaaccgcttatcaagaagtgttcaaaccagagaacattagc
ctgaggaacaagctgcgtgagctctgtgtcaagctcatgttcctgcacccggtggactat
gggaggaaggctgaggagctgctgtggagaaaggtgtactatgaagttattcagcttatc
aagactaacaaaaagcacatccacagccgcagcaccttggaatgtgcctacaggacacat
ctggtggctgggattggcttctaccagcacctgcttctctacatccagtcccactaccag
ctggagcttcagtgctgcatcgactggacccacgtcaccgaccccctcataggatgcaag
aagccagtatctgcctctgggaaggagatggactgggcacagatggcgtgccaccggtgt
ctcatgtacctgggggatttgtcacggtatcagaatgaattagctggcgtagacaccgag
ctgctagctgagagattttactatcaagccctgtcagtagccccccagattggnnnnnnc
ttcaaccagctgggcacgctcgcgggcagcaagtactacaacgtggaagctatgtactgc
tacctccgctgcatccagtcggaggtgtcctttgagggggcctacgggaatctcaagcgg
ttgtatgacaaggctgccaaaatgtaccaccagctaaagaagtgtgagactcggaaactc
tcccccagcaggaagcgatgtaaagacattaagaggttgctggtgaacttcatgtacctg
caaagcctcctgcagcccagaagcagcccggtggacgcggagctcacgtccctctgccag
tcagtcctggaggacttcaacctatgcctcttctacctgccttcttcacccaccctcagc
ctggccagcgagggcgaggaggactacgagggcggctacgctttcctcccggaccttctc
atcttccagatgctcatcgtctgtctcatgggtgtgcacagcttgaagagagcaggatcc
aagcagtacagcgcggccatcgccttcaccctggccctcttctcccacctcgtcaatcac
gtcaacatacggctacaggctgagctggaggagggcgagaaccccgtgccggcgttccag
agtgatggcacagatgagcccttggagaaggaggaggcgccaggccctgagccccctccc
gcagcacctcaagctggtgaggtcagaaagagccggaagttctcccgcctctcctgcctc
cgccgccgtcgccatccacccagagctggggatgacagtgacctgagtgaaggttttgag
tcggactccagccatgactcggccagggccagcgagggctcagacagtggctccgacaag
agtctggaaggtgggggaacggcctttgatgcggagacagactcggaaatgaacagccaa
gagtcccgatcagacctggaagatattgaggatgaggaggggacacggtccccagccctg
gagccccctcggcccaggtcagaggctcccgagtctctcaatggcccactgggccccaga
gaggccagcattgccagcaatctacaagccatgtccacccagatgttccagaccaagcgc
tgcttccgactggcccccaccttcagcaacctgctcctccagccccctgccgaagccccc
accgcggccagccgcaggccctgtgtcaacggagatgcggacaagccctcggagccagcc
tctgacgacggctccgagccagagggcagcgagtccagcgggcgctcctgtcggaacgag
cgcagtgtccaggagaagctgcaggtgctggcggctgaaggcctgcttcctgcggtcaag
gtcttcctggactggctgcgggccaacccggagctcatcgtcgtgtgtgcacagagctct
cagagcctgtggaatcgcctgtctgtgttgctgaacctgttgccagctgccggtgaactc
caggagtctggcctggccctgtgtcccgaggtccaggaccttctcgaaggtggtgaactg
cctgacctgccctctagcctgctgctcccagaggacacggcccttcgtaacctgcctccc
ctccgggccgcccatagacgctttaactttgacacagatcggcccctgctcagcgcctta
gaagagtcggtcgtgcgcatctgctgcatccgcagctttggccacttcgtcgcccgcctg
caaggcagcatcctgcagttcagcgcggaggccggcatcttcgtcagcatcgcccagtct
gagcaggagggcgtgttgccgcaggcccaggcccagctcctcatggctcaggaggaagcg
cgtcggaacaggctgatgcgggacatggcccagctacgactccagctcgaggtctctcag
ctagaagggagcctgcagcagcccaaggcccagtcggcaatgtctccctacctcgtcccc
gacacccaggccctctgccaccacctcccggttatccgccagctggccaccagtggccgc
ttcattgtcatcatcccgaggacagtgatcgacggcctggatttgctgaagaaggaacac
ccaggggcccgggatgggatccgatacctggaggcagagtttaaaaaaggaaacaggtat
attcgctgccagaaagaggtgggaaagagcttcgagaggcacaagctgaagaggcaggat
gcggatgcctggaccctctataagatcctggacagctgcaaacagctgaccctggcccag
ggggcaggtgaggaggatccaagcggcatggtgaccattgtcacgggcctcccactggat
gaccccagtgcgctgtcaggccctatgcaggtgggtcacagggggacctggggggcgggg
gtgaacggggaaggggtgccagagtag
DBGET
integrated database retrieval system
