Panthera tigris altaica (Amur tiger): 102968107
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Entry
102968107 CDS
T02988
Symbol
LSM5
Name
(RefSeq) LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
ptg
Panthera tigris altaica (Amur tiger)
Pathway
ptg03018
RNA degradation
ptg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102968107 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
102968107 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptg03019
]
102968107 (LSM5)
03041 Spliceosome [BR:
ptg03041
]
102968107 (LSM5)
Messenger RNA biogenesis [BR:
ptg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102968107 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
102968107 (LSM5)
Spliceosome [BR:
ptg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102968107 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
102968107
NCBI-ProteinID:
XP_007090591
UniProt:
A0A8C9K548
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All DBs
Position
Un
AA seq
91 aa
AA seq
DB search
MAANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaacgctactactaacccgtcgcagctgcttcctctagaacttgtggacaaa
tgtataggatcaagaattcacattgtgatgaagagtgataaagagattgttggcacactt
ttgggatttgatgactttgtcaatatggtactggaggatgtcactgagtttgaaatcaca
ccagaaggaagaaggatcactaaattagatcagattttgttaaatggaaataatataaca
atgctggttcctggaggagaaggacctgaagtatga
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integrated database retrieval system
