Pelotomaculum thermopropionicum: PTH_0313
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Entry
PTH_0313 CDS
T00519
Symbol
RpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit/160 kD subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pth
Pelotomaculum thermopropionicum
Pathway
pth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PTH_0313 (RpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pth03021
]
PTH_0313 (RpoC)
03400 DNA repair and recombination proteins [BR:
pth03400
]
PTH_0313 (RpoC)
Enzymes [BR:
pth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PTH_0313 (RpoC)
Transcription machinery [BR:
pth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PTH_0313 (RpoC)
DNA repair and recombination proteins [BR:
pth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PTH_0313 (RpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAF58494
UniProt:
A5D5I3
LinkDB
All DBs
Position
320285..323797
Genome browser
AA seq
1170 aa
AA seq
DB search
MLDLNNFDRIRIGLASPDQIRAWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVTDPGDTGLIKKQLLTETEYRDCRERYGNAFKASMGAEAIKKLLE
EINLEELARELRQELKEVTGQRKIRAIRRLEVVEAFRKSGNRPEWMILEVIPVISPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELHLHQCGLPKE
MALELFKPFVMKRLVNDGYAHNIKSAKRMVERVRPEVWEVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSSNNIL
NPKDGRPVAIPTQDMVLGIYYLTVEKQGVPGEGKAFKDPEEAVMAYYNNAVSLHAAVKVR
MPGMGRIETTVGRIIFNEVIPRELGYYNQVIDKKVLSKIVDDCYRKLGFSATSKLLDGIK
KLGFTFATRAGVTIGIQDITIPARKKEILKEAEQQVEKVEQQYRRGLITEEERYRKVIGI
WNDATKEVTDALIETLDKFNPVYMMANSGARGNIQQIRQLAGMRGLMADPSGRIIDLPIK
ANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREVDCGTGQGI
EVTEIKDGNEVIEKLEDRIIGRVALEDVKHPETGEILAFAGEEITESEAAKIVAAGIKKV
KIRSVLTCRTRYGVCIKCYGRNLATGRQVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGV
AGDDITQGLPRVEELFEARRPKGQAIIAEADGTVEVREVKGRREIEVTAEDGTKSVYQVP
YGARLKVRDGDRVYAGDELTEGSVNPHDLLKIKGVQGVQIYLLQEVQRVYRLQGVDINDK
HIEVMIRQMLRKVKVDEPGDTDLLPGGLIDIFEFEDENRRIKNLGGEPATAKPVLLGITK
ASLATDSFLSAASFQETTRVLTEAAIKGKLDLLLGLKENVIIGKLVPAGTGMSRYRNISV
VAESEPGEENGEPGGERLYGMDELYGETAN
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgctagatctgaataactttgaccgcatccgcatcggcctggcatctcccgatcaaata
cgcgcctggtccagcggcgaggtaaaaaagcccgagaccattaactacaggactttgaag
ccggaaagggacggcctgttttgcgagcgcattttcgggcccacccgggactgggagtgc
cactgcgggaaatacaagcgcgtccgctacaaaggggttgtctgcgacaggtgcggcgtg
gaggttacccgctccaaagtccgccgggagaggctcggccatatcgagctggctgctccg
gtttcgcacatctggtatttcaagggcattccgagccggatggggctgcttttagacatg
tcccccagggcgctggaaaaagttttgtatttcgtctcatatatagtgaccgatccgggc
gacaccggcctgatcaaaaaacagctcctgaccgaaacagagtaccgcgactgccgggag
aggtacggtaacgcctttaaagcctccatgggcgccgaggcaataaaaaagctgctggag
gaaatcaacctggaggaactggccagggaactccgccaggagctgaaggaagttacgggc
cagcgcaagatcagggccatccgccgcctggaagtggtggaggccttccgcaagtcgggc
aaccggccggagtggatgatcctggaggtaattccggtgatatctcccgaactgcgcccg
atggtgcagcttgacggaggccgtttcgccacctcggacctgaacgacctctaccgccgg
gtaatcaaccgcaacaaccgcctgaaaaggcttctggacctgggcgcgccggacatcatc
gtccggaacgaaaagaggatgctccaggaggcggtggacgccctaatcgacaacgggcgc
cggggccggccggtgaccgggccgggcaaccgccccctgaagtcgctttccgatatgctg
aaggggaagcagggccgcttccgccagaacctcctgggcaagcgggtggactattccggc
cgttcggttatcgtggtggggccggagctgcacctccaccagtgcggcctgcccaaggag
atggccctggagctgttcaagccttttgtcatgaagcgcctggtcaacgacggctacgcc
cataacattaaaagcgccaagcggatggtcgagcgggtgcgccccgaggtgtgggaggtt
ttagaagaagtcattaaagagcaccccgtgctgttgaaccgcgctcccaccctgcaccgc
ctgggcatccaggcctttgagccggtgctggtggagggccgcgccatccagattcacccg
atggtctgcaccgcttacaacgccgacttcgacggagaccagatggcggtgcacgttccc
ctttcggccgaggcccaggccgaggccaggcttttaatgctgtcctccaataacattttg
aacccgaaggacggcaggccggtagccattcccacccaggacatggttttaggcatttat
tacctgaccgtggaaaaacagggagttcccggcgaaggaaaagccttcaaggatcccgaa
gaagccgttatggcctactacaacaatgcggtttcgcttcatgccgcggttaaggtgcgc
atgcccggcatggggcggatcgagaccacggttgggaggatcattttcaacgaggtcatc
ccgcgggagctaggctactacaaccaggttatcgataaaaaggtcctgagcaagattgtt
gacgactgctacaggaagctgggattttcggccacctccaagctcctggacggcatcaag
aaactgggtttcacctttgccaccagggcgggggtgaccatcggcatccaggacatcacc
attccggccaggaaaaaggaaatcttaaaagaggcggagcagcaggttgaaaaggtggag
cagcagtaccgccgcggcctgatcaccgaggaggagcgctaccgcaaggtaatcggcatc
tggaacgacgccacgaaagaagtaaccgatgcgttgattgaaaccctggacaaattcaac
ccggtgtacatgatggccaactccggcgcccgcggcaacatccagcagatccgtcagctt
gccgggatgcgggggctgatggccgatccgtcgggccggattattgacctgcccattaaa
gccaacttccgggaaggcctgaccgtcctggagtactttatctccacccacggtgccagg
aagggcctggccgacacggccttaaggacggccgactccggctacctcacccgccggctg
gtggatgtcgcccaggacgtgatcgtgcgcgaagtggactgcggcaccggccagggcatt
gaagtaaccgagattaaagacggcaacgaggtcattgaaaagttagaagatcgcattatc
ggccgggtggccctggaggacgtgaaacaccccgaaacgggcgagatcctggcctttgcc
ggggaggaaattaccgagtccgaagcggcaaagatcgtcgccgcgggcattaaaaaggtc
aagatacgttcggtattaacctgcaggacccgctacggggtctgcatcaagtgctacggc
cgcaacctggccaccggccggcaggtggacatcggcgaggccgtgggcattattgccgcc
cagagcatcggcgagccgggcacccagttgaccatgcgcacattccataccgggggcgtg
gccggggacgacatcacccagggcctgccgcgggtggaggagcttttcgaggcccgccgg
cccaagggccaggccatcattgccgaggccgacggcaccgtcgaggtgcgcgaggtgaaa
gggcggcgggagattgaggtaacggccgaagacggtaccaaatcggtctaccaggtgccc
tatggcgcccgcctgaaggtcagggacggcgaccgcgtctacgccggcgacgagcttacc
gaaggctccgtgaatccgcacgacctgctcaaaattaagggagtgcagggagtgcagatc
tacctgcttcaggaggttcagcgggtttaccggctgcagggcgtggacattaacgacaag
cacatcgaagtgatgatccgccagatgctccgcaaggtcaaggtggatgagccgggcgac
accgacctgctgcccggcgggctgatcgacatcttcgagttcgaggacgagaacaggcgc
attaaaaacctgggcggcgagccggccaccgccaagccggtgctgctgggcataaccaaa
gcctccctggccaccgactccttcctctccgcggcctccttccaggagaccaccagggtg
cttaccgaggccgccatcaaaggcaagctggaccttttgctcggcctgaaggagaacgta
atcatcggcaagctggtcccggccggcacgggcatgtcccgctaccgcaacatcagcgtc
gttgcggaaagcgagcccggggaggagaacggcgagccgggcggcgaaaggctttacggc
atggatgagctctacggcgagacggcaaattaa
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