Pelotomaculum thermopropionicum: PTH_0907
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Entry
PTH_0907 CDS
T00519
Symbol
RpoD
Name
(GenBank) DNA-directed RNA polymerase, sigma subunit
KO
K03086
RNA polymerase primary sigma factor
Organism
pth
Pelotomaculum thermopropionicum
Pathway
pth02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pth00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PTH_0907 (RpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pth03021
]
PTH_0907 (RpoD)
Transcription machinery [BR:
pth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PTH_0907 (RpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4
CENP-B_N
HTH_10
Exonuc_VII_L
DUF2316
DUF2408
Motif
Other DBs
NCBI-ProteinID:
BAF59088
UniProt:
A5D3U6
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All DBs
Position
926404..927495
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AA seq
363 aa
AA seq
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MRDDEKNDGVRELIEKGKKRGVLTYNEIMDSLQGTDLTPEQIDDIYEKLAGLGIEVVPEI
PDIEPLDSSALENPPDEVEVDLSIPEGVGIDDPVRMYLKEIGRVPLLTPEEEVELAKRME
KGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFST
YATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELGRDPSPEEIAKEMNI
TEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIEDHEARAPAEEASFTLLREQLDEVLK
TLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKD
YLD
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
gtgagagatgatgaaaagaacgacggtgtcagggaattaatagaaaaggggaaaaagcgc
ggtgttctgacttacaatgaaataatggacagtctccagggtaccgacctcacacccgag
caaattgatgacatttacgaaaaacttgcaggtctgggcatagaagtcgttccggagatt
ccggacatagagcccctggacagttctgctcttgaaaatccgcctgacgaggtggaagtc
gacctttccatccccgagggcgttggcatagatgaccctgtgcggatgtatttaaaagaa
attggccgtgttccgctcctgacccctgaagaagaggtagaacttgccaaacgcatggag
aagggagatgaagaggccaaaaggaggctggcggaggccaacttaaggctggtggtcagc
attgccaagcgctatgtgggcaggggcatgctcttcctggacctgatccaggaaggcaat
ctggggctgattaaggctgtggaaaagtttgactaccgcaaggggtacaagttcagcact
tatgccacctggtggattcgccaggccataaccagggccatagccgatcaggccaggacg
atcagaatccccgtgcacatggtggaaaccataaataagctcgtcagggtgcagcggcag
cttttgcaggaactgggccgcgatcccagcccggaagagattgctaaagagatgaacatc
accgaggacaaggtgagggaaattttgaagatagcccaggagccggtatcgctggaaacg
ccgattggcgaggaagaagactcgcacctgggggatttcattgaggatcacgaggccagg
gcgccggccgaggaggcttcctttacccttttgcgcgagcagctcgacgaggtgctgaaa
acattgaccgagcgtgaacagagggtgctgcgcctgcgctttgggcttgacgacggccgt
gcccgcaccctggaggaagtggggcagaagttcggcgttaccagggagcgaatccgccag
atagaggccaagactctgcgcaagctgcgccatcccagccgcagcaaaaaattgaaagac
tacctggattaa
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