Providencia stuartii 2017-45-35: OI982_00285
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Entry
OI982_00285 CDS
T09168
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptha
Providencia stuartii 2017-45-35
Pathway
ptha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI982_00285 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptha03019
]
OI982_00285 (rne)
03009 Ribosome biogenesis [BR:
ptha03009
]
OI982_00285 (rne)
Enzymes [BR:
ptha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OI982_00285 (rne)
Messenger RNA biogenesis [BR:
ptha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OI982_00285 (rne)
Ribosome biogenesis [BR:
ptha03009
]
Prokaryotic type
rRNA processing factors
OI982_00285 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
WIJ73981
LinkDB
All DBs
Position
complement(60362..63613)
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAESL
QQDLLYRLRHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMA
RNHIEAIGRGDFASKIKYYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVSEIETRQRNVRVVIVPNDQMQ
TPHFHVIRIRKGEEVNTLSYNLAHYHETETLNSTEDPAAERKAPEQPAISAFALQEPVEQ
PVTVKSKENKARTETPKQGVKVDAQPSFFSKVAEFFKKLFAGEEEKVAEKPAEKNRQNSG
NDKRRNNERRNNRRNNRRDRDENSDNRENRDNRSNRNAQSDEANNRKGRNNKNVNQQDEQ
NVDSNSREAQQQQRREQRAERRRRQDEKRQQQAAKAQQEAVQGADNTPVEKEEPQARPVT
PRRQRRQLTQKIRITDNVEAVAQEDEVVKVATAVENDAMPIAALPAPTHVDEQVAEVNSS
EQQDVQVANQEDKQDTIIPRRSRRSPRHLRVSGQRRRRYRDERHLTKSPMPLFAAVASPE
LASGKVFISYPVVQPQQETIAIMTNEEMLEQQGIVSVEAVETTDITPSQVIEQANETVET
VAIEPVETVTETNVNLVAESADEHAVSLEPAIAPQAEPAVVHTEQALEDTQPEPVVETAP
TVEPKAPVAVIEDVVIEQPKVEPTAETAEQDDQPQTSTDAVEEPKAEAVEVPYVAKSTVI
VASKAARHAYSPMTKAPAPEVVESTFEIKVYQREASTFVSKGAGGHVATNYATSQMAKPA
HFE
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaacgcgactcaacaggaagagttgcgtgttgcccttgttgac
gggcaacgactctatgatctggatatcgaaagtccaggtcatgaacaaaaaaaagcgaat
atttacaaaggaaaaataactcgcatcgaaccaagtcttgaagctgcttttgttgattat
ggtgctgaaagacacggtttcctccctatcaaagagatcgctcgcgaatacttcccaagc
aattaccactctcaaggccgccccaatatcaaagatgtccttaaggaaggccaagaagtt
atcgttcaggttgataaagaagagcgtggcaataaaggtgctgcactcaccacgtttatc
agcttagcgggaagttatttagtactgatgccaaataacccgcgtgcgggtggtatttct
cgccgtattgaaggtgaagatcgtacagaattaaaagaagcgctctcctcccttgagatc
ccggatgggatggggttgattgttcgcaccgcgggcgtgggtaaatccgcagaatcttta
caacaagatttgctctaccgcttacgccactgggaagctatcaaaaaagcggctgaaaac
cgccctgctccgttcttaatacaccaagaaagtaacgtcattgttcgtgcgttccgtgac
tatttacgcccagatatcggcgaaatccttatcgataacccgaaagtggtcgaaatggca
cgtaaccatattgaagcgattggccgtggtgattttgccagcaaaatcaaatattatagc
ggcgatgttccgctatttagccattatcaaatcgaatcacaaattgaatctgccttccaa
cgtgaagtacgccttccatctggtggtgcattagtgattgataccaccgaggcgttaacg
gctatcgatatcaactcttcacgctcaacacgcggcggagacattgaagagaccgcattt
aatacaaaccttgaagcggccgatgagatcgcacgtcaattacgtctgcgtgaccttggc
ggcttaattgttatcgactttatcgatatgacgccagtcaggcatcaacgtgaagttgaa
aaccgcctacgtgaggccgtgcgtcaagaccgtgcacgtattcaaatcgcccgtatctcg
cgtttcggtttattagagatgtcgcgccagcgtttaagcccatcattaggtgaatctagc
caccatgtgtgccctcgttgctcgggtacaggaaccatccgtgataatgaatcattgtct
ctttctgttttgcgtcttattgaagaagaagcattaaaagagaatacacatgaagttcat
gctatcgttccggtacaaattgcttcctatctacttaacgaaaagcgtaaagcagtcagc
gaaatcgaaacgcgtcaacgcaatgttcgcgtggtcattgtgccaaacgaccaaatgcaa
acgcctcattttcacgtgatccgtattcgtaaaggtgaagaagtaaatacgctgagctat
aacttagctcactaccatgaaacggaaaccttaaacagtacggaagatccagccgctgaa
cgtaaagcccctgagcaaccagctatctctgctttcgcgttacaagagcctgtagaacag
cctgttactgttaagtctaaagagaacaaagcacgcactgaaacaccaaaacaaggggtt
aaagtggatgcccagccgagcttttttagcaaggtagctgaattcttcaaaaaactcttc
gctggtgaagaagaaaaagttgctgaaaaacctgctgagaaaaatcgccaaaatagcggt
aacgacaagcgccgtaacaatgaacgccgcaataatcgtcgtaataatcgccgtgatcgt
gatgaaaacagtgacaaccgcgaaaatcgcgataatcgttctaaccgtaatgcgcaatct
gacgaagctaacaatcgtaaaggccgcaataataagaacgttaatcagcaagatgagcaa
aacgttgatagcaatagccgtgaagcgcagcaacagcagcgccgcgaacaacgtgctgaa
cgccgtcgccgtcaagatgaaaaacgtcaacaacaagcagctaaggcacaacaagaggca
gttcaaggtgctgataatacacctgtagagaaagaagagcctcaagcgcgccctgttacg
cctcgtcgtcaacgtcgtcaattgacacaaaaaattcgtatcactgataacgttgaagcc
gtagcgcaagaagatgaagtggttaaagttgcaactgccgttgaaaatgatgctatgcct
atcgcagcactccctgctccgactcatgttgatgagcaagtggctgaggtaaatagctca
gaacaacaagatgttcaagttgctaaccaagaagataagcaagataccatcattccacgt
cgctcacgtcgttcaccacgtcacctacgtgtcagtggtcagcgtcgtcgtcgttaccgt
gatgagcgtcatctgacaaaatcaccaatgcctctgttcgctgccgtagcctcacctgag
ttagcgtcaggtaaggtgtttatcagctatcctgttgttcaaccacaacaagaaaccatc
gctatcatgaccaatgaagagatgcttgagcaacaaggtattgttagtgtagaggccgtt
gaaaccaccgatatcacaccttctcaggtcatcgagcaggctaatgaaacggttgaaact
gtcgctatcgaaccagtagaaaccgtcactgaaaccaacgttaatcttgtggctgaatcc
gcagatgagcatgcagtttctcttgaacctgccattgccccacaagctgaacctgctgtc
gttcatacagagcaagctctagaagacactcaaccagagcctgttgttgaaacggcacca
accgttgaacctaaagcaccggtcgcagtcattgaagacgttgtgattgagcaacctaaa
gtggagcctacagctgagacagccgaacaagatgatcagccgcaaaccagcacagatgca
gttgaagagcctaaggctgaagctgttgaagtgccttatgtagcgaaatcaacggttatt
gttgcaagtaaggcagcacgtcatgcttactcaccaatgaccaaagcaccagcgcctgaa
gtggtcgaatcaacattcgaaatcaaggtttaccagcgtgaagcctcaacctttgtcagt
aaaggtgccggtgggcatgtagcaaccaattatgcgacatcacaaatggcaaaaccggct
cattttgaatag
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