Providencia stuartii 2017-45-35: OI982_02880
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Entry
OI982_02880 CDS
T09168
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ptha
Providencia stuartii 2017-45-35
Brite
KEGG Orthology (KO) [BR:
ptha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptha03019
]
OI982_02880 (hrpA)
Enzymes [BR:
ptha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OI982_02880 (hrpA)
Messenger RNA biogenesis [BR:
ptha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OI982_02880 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
nSTAND3
HA2_N
ResIII
NACHT
PhoH
ABC_tran
AAA_11
T2SSE
NTPase_1
AAA_25
AAA_30
Lsm_interact
Zeta_toxin
SLFN-g3_helicase
TsaE
RsgA_GTPase
Motif
Other DBs
NCBI-ProteinID:
WIJ74470
LinkDB
All DBs
Position
complement(585791..589681)
Genome browser
AA seq
1296 aa
AA seq
DB search
MLTALEADIGQTSLRDQRLLKKRLQGIVKIRDEKSRVAVLNAIKADVETAKQKISNKLLN
PPKIVYPENLPVSQKKQAIYDAIKQHQVVIIAGETGSGKTTQIPKICLELGRGVKGLIGH
TQPRRLAARAVATRLAQELESEVGTIVGYKVRFSDQVSDSTQVKLMTDGILLAELQNDRL
LLQYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSRHFNQAPII
EVSGRTYPVEVRYRPIMGDDNDSDRDQIDGIIDAVNELGQESSGDILIFMSGEREIRDTA
DALSKLQLRHTEILPLFARLSNSEQNRIFHPHGGRRIILATNVAETSLTVPGIKYVIDTG
YARISRYSVRTKVQRLPVEPISQASANQRKGRCGRVSDGICIRLYSEEDFLSRPEFTDPE
ILRTNLASVILQMTSIGLGDISAFPFVEAPDKRNIQDGVKLLEELGAIQAHQQSERGYIL
TDIGRQLAQLPVDPRLARMVIEARKLGAVRETMVIVAALSIQDPRERPLDKQQAADEKHR
RFRDKQSDFLAFLNLWDYLKEQQTALSNAQFRKMCRQDFLNYLRIREWQDLYTQLRQVVK
EQGFPINSAAADYRCIHTSLLAGLLSHIGQKDVEKPEFTGARNARFTIFPGSGLFKKPPK
WAMVAELVETSKLWGRVAATIEPEWIEPLAEHLVKHHYSEPHWSKSQGAVMASEKVTLYG
LPIVAARQVNYGKIDPLLCRELFIRHALVEGDWVTRHAFFRENRKLLAEVEDLEHKSRRR
DILVDDETLFAFYDQRIPNDVISTRHFDKWWKVASKQQPDLLNFEKNMLIKEDAAHVSLL
DYPNFWHQGELKFRLSYQFEPGTEADGVTVHIPLAILNQVHNVGFEWQVPGLRQELIIAL
IKSLPKPVRRNFVPAPNYAAAFLERVPTPDGSLLDKLERELRRMTGVTVERDAWQLDQLP
SHLKMTFRVVGEKNKTIAEGQDLDELKNRLKEKVQETLSEVVDDGIEQSGLHIWSFGELP
QRYEQKRGGYSVKAYPALVDERNSVGIRVFETEFEQQQAMWGGVRRLLLLNIPSPIKYLH
EKLPNKSKLGLYFNPYGKVLELIDDCIACGVDQLIATYGGPVWTEDGFGKLQEFVRAELN
DAVVQIAKQVEQILTAVFAINKRLKGRVDFAMAMALSDIKGQMSNLVFKGFVTEHGWKRL
PDVLRYLNGIERRLEKLAIDPNRDRAQMSKVEHVTQMWQQWKAKLTPVQQQLPEVQEIRW
MIEELRISLFAQQLGTPYPISDKRIIQSMENLSQSL
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgctgacagccttagaagctgatattggacaaacttcattacgtgaccaacggttactg
aaaaagcgtcttcaaggaatagttaaaattcgtgatgaaaaatcacgagttgcggtactg
aatgcgataaaagcggatgttgaaacagcgaaacaaaaaatttcgaacaagctgcttaat
ccacctaaaatcgtctatccagaaaatcttcctgttagtcaaaaaaaacaagctatttat
gatgcgataaaacagcatcaagtggtgatcatcgcgggtgaaacagggtccggtaaaacg
actcagatccccaaaatatgtctggaattagggcgaggcgttaaagggctaatcggtcat
acacaaccaaggcgactagccgctcgtgcggtagcaacccgtctagctcaagagcttgaa
agcgaagtcggaactattgttggttataaagttcgctttagtgatcaagtgagtgatagt
acacaagtcaaattaatgacagatggcattttgttagcagaactgcaaaatgataggtta
ctgctgcaatatgatacgatcattatcgatgaggcccacgaacgtagcctaaatatcgat
tttatcttaggttacctgcgccaattattacctaaacgtcctgatctaaaagtcattatt
acgtcagcaactatcgatcctgaacgtttctctcgccattttaatcaggcacccattatt
gaagtgtcggggagaacttatcccgttgaagtgcgttatcgcccgattatgggggatgat
aatgacagcgaccgcgatcaaatcgatggcatcattgatgctgtaaatgagcttggacag
gaaagttcaggggatattttgatctttatgagcggtgaacgagaaatccgcgataccgca
gatgccttgtcaaaattacaattgcgccataccgaaatcttaccgctatttgctaggcta
tcgaatagtgaacaaaatcgcatattccacccacatggtgggcggcgaattattttagcc
actaacgttgctgaaacgtctttgaccgtgcctggcatcaaatatgtcattgatactggt
tatgcgcgaataagccgttacagtgttagaaccaaggtgcagcgcttacctgttgaaccg
atctcccaagcttcagcaaatcagcgtaaaggtcgctgtggtcgtgtttctgatggtatt
tgtattcgtttatattctgaagaggactttttaagtcgcccagagtttaccgatcctgaa
atactaagaaccaatttggcgtctgttattttacaaatgacctcaattggcttaggagat
attagcgcatttccatttgtcgaagctccggataaacgtaatattcaagatggcgtgaag
ttattagaagagcttggggctattcaggcgcatcaacagagtgaacgcggttatatattg
acggatattggtcgtcaattggcgcaactaccggttgacccacgtctcgctcgaatggtg
atagaagcgagaaagctaggggcagtcagggaaaccatggtgattgtggcggcattatcg
attcaagacccaagggagcgcccattagataaacaacaagcggcagatgaaaagcatcgc
cgcttccgcgataaacaatctgatttcttagcattccttaatctgtgggattacttaaaa
gagcagcaaaccgctttatcaaatgcgcaatttagaaaaatgtgccgccaagattttttg
aactatttacgcattcgagagtggcaagatctctatactcaattgaggcaagttgttaaa
gagcaaggttttccaattaatagtgcagcggcagattaccggtgtattcatacatcatta
cttgctgggctgctatctcatatcggtcaaaaagatgtggaaaaaccagaatttacaggc
gctaggaatgcaagattcactattttccccggctcaggtttatttaaaaagcccccaaaa
tgggcaatggtcgccgagttagtagaaacgtcaaaattatgggggcgggtggctgcaact
attgagcctgaatggatagagccgttagcggagcaccttgttaagcatcattacagcgaa
cctcattggtctaaatcgcaaggtgctgtgatggcctctgaaaaggtcactttgtatgga
ttaccgatcgtcgccgcgcgccaagtgaattacgggaaaatcgaccccttattgtgtcgc
gagcttttcattcgtcatgcacttgtcgaaggggattgggttactcgtcacgcatttttc
agggaaaaccgtaagctattggcggaagttgaagatttagaacacaagtctcgtcgtcgt
gatattttggttgatgatgaaaccttgtttgcgttttatgaccagcgtatccctaatgat
gtgatctctactcgccattttgataagtggtggaaggttgcttcaaaacagcagcccgat
ctcctgaactttgaaaaaaatatgttgatcaaagaggatgcggcgcacgtttcattgcta
gattatccaaatttttggcatcaaggtgagctgaaattccgcttaagttatcaatttgaa
ccaggaacggaggcagatggggtgacagtgcatatcccattagccattttaaaccaagta
cacaatgttggttttgagtggcaagtcccggggttacgtcaagaactgattattgcgttg
attaaatcattacctaagcctgtacgtcggaattttgtgcctgcacctaattatgccgcg
gcatttcttgaaagagtaccgacaccagatggtagcctacttgataagcttgagcgtgaa
ttacgtcgcatgacaggggtgactgttgaacgtgatgcttggcaattagaccaactacct
agccatttgaaaatgacattccgcgtagtgggtgaaaaaaataaaaccatcgctgaaggt
caagatctggatgaattgaaaaatcggctcaaagaaaaggtacaagaaaccctttccgaa
gtggttgatgatggcattgaacaaagcggcttacatatctggagctttggtgagttacct
caacgttacgaacagaaacgaggagggtattctgttaaggcttatccggccttagtggat
gaaagaaacagtgttgggatccgcgttttcgaaaccgaatttgaacaacaacaagcgatg
tggggtggtgtacgtaggttactgttactgaatattccatcgccaattaaatacttacat
gaaaaactcccgaacaaatctaaactgggattatattttaatccgtatggaaaagtttta
gagttaatcgatgattgtatcgcctgtggtgttgatcaactcattgcgacttatggtggc
cctgtgtggacggaagatgggtttggcaagttacaagagtttgtgcgggctgaactcaat
gatgcagttgtacaaatcgcgaaacaagttgagcaaatactcactgcggtatttgcaatc
aataaacgcttaaaaggacgcgttgactttgcgatggcaatggcactttcggatataaaa
gggcagatgtctaacttagtctttaaaggctttgtcactgaacatggttggaaacggctt
cctgacgtgctccgttatttgaatggtattgagcgccgattagaaaaactggcgattgat
cctaatagagaccgtgcccaaatgagtaaagtggagcatgtgacacaaatgtggcagcaa
tggaaggcgaaactgacaccagtacaacaacaattaccggaagtacaagagatccgttgg
atgatcgaagagttgcgtataagcctatttgcacagcagcttggtacgccgtatccgatt
tcggataaacggattattcaatcaatggaaaatttaagtcagtcactttga
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