Providencia stuartii 2017-45-35: OI982_11205
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Entry
OI982_11205 CDS
T09168
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptha
Providencia stuartii 2017-45-35
Pathway
ptha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI982_11205 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptha03019
]
OI982_11205 (rnr)
03016 Transfer RNA biogenesis [BR:
ptha03016
]
OI982_11205 (rnr)
Enzymes [BR:
ptha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OI982_11205 (rnr)
Messenger RNA biogenesis [BR:
ptha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OI982_11205 (rnr)
Transfer RNA biogenesis [BR:
ptha03016
]
Prokaryotic type
tRNA degradation factors
OI982_11205 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WIJ75970
LinkDB
All DBs
Position
complement(2260669..2263143)
Genome browser
AA seq
824 aa
AA seq
DB search
MSRDPFQEREAEKYDSPIPSREFILELLTKRSAPAKREEIAQLLNLSSEEELEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGYGFLRVEGKKEDYYLSQDEMKRALH
GDVILAQAYGQDRKGRTEVRVVRVLEPRNNQIVGRYFIESGMGFVVPDDSRLSFDILIPK
DQINGARMGNVVVVELITRPQRRSQAVGHIIEVLGESMGTGMAVEIALRTHEIPHTWPLQ
VKKQVADLNEQVPESAKKGRVDLRDLPLVTIDGEDARDFDDAVHCAPKKGGGWRLWVAIA
DVSYYVRQQTALDDEARSRGNSVYFPSQVVPMLPEVLSNGLCSLNPGVDRLCMVCEMTVS
ASGRLSSYKFYEAVMNSHARLTYTKVWKILQGDEELREHYKALVPHIEQLHALYKTLDNA
RIDRGAISFESEEAKFIFNAERRIERIEPVERNDAHKLIEECMILANIAAARFVEKHEEP
ALYRVHDRPKEESVMNLRSVFSELGLTLPGGMKPEPKDYAQVMNEVADRPDHELLQTMIL
RSMKQAIYDPENRGHFGLALKSYAHFTSPIRRYPDLTLHRGIKYLLAKEQGHTDHRWTPT
GGWHYDMDSMLQLGEHCSMTERRADEATRDVADWLKCDFMQDQVGQVFTGLITSVTGFGF
FVRLNDLFIDGLVHVSTLDNDYYRYDAVGQRLIGESSGTTYRLGDEVEIRVEAVHMDERT
IDFALISTTRKAKNPGKTARDKMKKEVKNATKSARGKRDVSRDKNFEPDSAFRRSDKNGK
KTDKKAGKKAETKAKGKKASDKTKKISAKLKAKRAAKKAQKQEG
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgcgatccttttcaggaaagagaagcagaaaaatacgattccccaattcctagc
agagaattcattctcgaactcctcactaagcgctcggctccagcaaaacgtgaagaaatt
gcacaattattaaacctctcttctgaagaagagttagaagcattacgccgtcgcctgcgt
gcaatggagcgtgatggtcaattggtgtttacccgccgtcaatgttacgcactacctgag
cgtttagacctcctcaaaggaaaagtaataggtcaccgtgatggttatggcttcttgcga
gttgaaggtaaaaaagaagattactatttatcacaagacgaaatgaaacgtgcattgcac
ggtgatgttattttagcacaagcttatggtcaggaccgtaaagggcgtacagaggtacgt
gtggtccgtgtccttgagcctcgtaataaccaaattgttggtcgctattttattgagtca
ggtatggggtttgttgtgcctgatgatagccgcttaagcttcgatattttgatccctaaa
gaccaaattaatggcgcgcgaatggggaacgtggtggtggttgaattaatcacgagacca
cagcgtcgctctcaggcggtaggtcatattattgaagtattaggggaaagtatgggaacg
ggaatggcagtcgaaattgccttgcgtacccatgaaatcccacatacatggccccttcaa
gtgaaaaagcaggtcgctgacttaaatgaacaagtaccagagtctgctaaaaaaggccgc
gtcgatttacgtgatttgccactcgtgactatcgatggtgaagatgctcgtgactttgat
gatgcagtacactgtgcgccgaaaaaaggcggtggctggcgcttgtgggttgcgatagct
gatgttagctattatgttcgtcaacaaaccgcccttgatgatgaagcgcgtagccgcggt
aactcggtctatttcccatcacaagttgttccgatgttaccggaagtgttatcgaacggc
ctgtgttcactgaatccaggtgtcgatcgcttgtgtatggtatgcgaaatgaccgtgtcg
gcatctggtcgcttatcatcatataaattctatgaagcggtgatgaactctcacgcaaga
ttaacctacactaaagtatggaaaatcttgcaaggtgatgaagagttacgcgaacactac
aaagcattagtgcctcatattgaacagcttcatgctctgtataaaacgttagataatgca
cgtattgaccgcggggccatctcttttgaatctgaagaagcgaagtttatctttaatgct
gaacgtcgtattgagcgtattgagcctgtagagcgtaatgatgctcataaactgattgaa
gagtgtatgatcttagccaacattgcggcggctcgttttgttgaaaaacatgaagagcct
gcattgtatcgtgtgcatgatcgcccgaaagaagagagcgtgatgaatttacgttctgta
tttagtgagttagggttaaccttgccggggggaatgaaaccggagccgaaagattatgca
caggtcatgaatgaagtggctgaccgtcctgatcatgagttgctgcaaaccatgatcttg
cggtcaatgaagcaagccatttatgatccagaaaaccgaggtcactttgggcttgcttta
aaatcctacgctcactttacatcgccaattcgtcgttatcccgatctaacgttgcataga
ggtatcaagtacttactggctaaagagcaggggcataccgatcatcgttggacgccaaca
ggtggctggcactacgatatggatagtatgttgcagttaggtgaacattgctcaatgact
gagcgccgtgccgatgaggcgactcgcgatgtggcggattggttaaaatgtgactttatg
caagaccaagttggtcaagtgtttactgggttgattaccagtgtgacaggctttggcttc
tttgtacgccttaatgatttgttcattgatggcttagtgcatgtttcgacgctggataac
gattactatcgctatgatgcggtgggccaacgtttaattggtgaatcatcgggaaccaca
tatcgacttggtgatgaagttgaaattcgtgttgaagctgtgcatatggatgagcgtacg
atagatttcgcgttgatttcaacgacacgtaaagctaaaaatccgggtaaaacagcccgt
gataaaatgaaaaaagaagtcaaaaatgccactaaatccgcgcgtggtaaacgcgatgta
agccgagataaaaacttcgagcctgattcagcattccgtcgctcagacaaaaatggcaag
aaaacggataaaaaagcgggtaagaaggcagagacaaaggcgaaaggtaaaaaagcctct
gacaaaacgaagaaaatcagtgcaaaattaaaagcaaaacgtgcagcgaaaaaagcccag
aagcaagaagggtaa
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