Pseudodesulfovibrio thermohalotolerans: LF599_01830
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Entry
LF599_01830 CDS
T09613
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF599_01830 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pthe03019
]
LF599_01830 (rny)
Messenger RNA biogenesis [BR:
pthe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LF599_01830 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
KH_NusA_2nd
DUF16
Motif
Other DBs
NCBI-ProteinID:
WFS62928
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All DBs
Position
complement(388154..389710)
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AA seq
518 aa
AA seq
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MLAEIAMVGGGLIVGLGTGSILFKYITDKKISDSKGLAERIVEEARKESEALKKESRLQA
QDEIFNQKKELEREFKDRESQLKNEEKRLHSKEERLDAKREKVADKEAQVVELEKQLIKQ
EKHLSEVEEDLVQKSDEHERKLQEISGLTVEEARESLLKEIESRTRHESAKMIRNIEMEA
KENASKKAKEILSLALQRYAGDYAGEQTVTAVTLPSEDMKGRIIGREGRNIRALEAATGV
DLIIDDTPETVVLSAFSPLKREVAKQALERLIHDGRIHPARIEEIVRKVEGEMDTKLKEI
GEQATFDVGVHGIHPELINLLGRLHYRTSFSQNVLQHSMEVAFLCGVMAAELGLNEKEAK
RAGLLHDIGKAVDHEVEGPHAIIGADLAKKHGESKEIIHSIAAHHEDTPPMTILANLVQA
ADSLSGARPGARKELLENYVKRLEELEGLATGFDGVQKAYAIQAGREIRVMVDSEKVGDE
NTYVLCKDIAEKIENNMTYPGQIRVTVIREKRAVGYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgttagccgaaatcgccatggtcggcggtggattgatcgtcggcctcgggaccgggtcc
atactcttcaaatacattaccgacaaaaagatttccgattcaaaaggacttgcggaacgc
atcgtcgaggaagcccgcaaggaaagtgaagccctcaaaaaggaatcgcgactccaggcc
caggacgaaatattcaaccagaagaaagagctggagcgggaattcaaggaccgcgaaagc
cagctcaagaacgaggaaaagcgtctccactccaaagaggagcggcttgacgccaagcgg
gaaaaggtcgccgacaaggaggcccaggtggttgagctggaaaagcagctcatcaaacag
gaaaagcacctgagcgaagtcgaggaggacctggtccagaaatcggacgagcacgagcgc
aagcttcaggagatttccggcctgaccgttgaggaggcccgcgaaagcctgctcaaggaa
atcgaatcccgcactcgtcacgaatccgccaaaatgattcgcaatatcgaaatggaggcc
aaggaaaacgcctccaagaaggccaaggagatactctccctggccttgcagcgttatgcg
ggagactacgcgggcgagcagaccgtcaccgccgtcaccctgccctccgaggacatgaag
ggccgcatcatcggccgcgaggggcgcaacatccgcgcgctggaagcggccaccggcgtg
gacctgattatcgacgacacgcccgaaaccgtggtcctgtccgccttcagtcccctgaag
cgcgaagtggccaagcaggcgctcgaacgactcattcacgacggccgcatccaccccgcc
cgcatcgaggagatcgtccgcaaggtggaaggcgaaatggacaccaagctcaaggagatc
ggcgagcaggccaccttcgacgtgggcgtccacggcatccatcccgagctcatcaacctg
ctgggcaggctgcactatcgcaccagcttctcccagaacgtgctccagcactccatggag
gtcgccttcctgtgcggcgtcatggccgccgagcttggcctcaacgagaaggaggccaaa
cgcgccgggctgctgcacgacatcggcaaggccgttgaccacgaggtagaaggcccccac
gccatcatcggcgcggacctggccaaaaagcacggcgagtccaaggagatcatccactcc
atcgccgcccaccacgaggacacgccgcccatgaccatcctggcgaacctggtccaggcc
gccgactccctgtccggcgcccgtcccggcgcgcgcaaggagctgcttgagaactacgtc
aagcgcctcgaagaactcgaagggctggccaccgggttcgacggcgtgcagaaggcctac
gccatccaggcgggccgcgaaatccgcgtcatggtcgattccgaaaaggtcggcgacgag
aacacctatgtgctctgcaaggacatcgcggagaagatcgagaacaacatgacgtatccc
ggccagatccgggtcacggtcatccgcgagaagcgggccgtgggctacgccaagtaa
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