Pseudodesulfovibrio thermohalotolerans: LF599_05545
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Entry
LF599_05545 CDS
T09613
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03410
Base excision repair
pthe03430
Mismatch repair
pthe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LF599_05545 (recJ)
03430 Mismatch repair
LF599_05545 (recJ)
03440 Homologous recombination
LF599_05545 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pthe03400
]
LF599_05545 (recJ)
DNA repair and recombination proteins [BR:
pthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LF599_05545 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LF599_05545 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LF599_05545 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
WFS63629
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Position
1216007..1217659
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AA seq
550 aa
AA seq
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MAEELNVSPLIVEILWNRGLSDVDEMDRFLSPLLRHMANPAEVPGLTEAAETLARGLDEG
RKLAVWGDYDVDGITATAVIKEFFAMRGMEVMHHLPNRMEEGYGMNVPGVEHLHEQGATM
LLTVDCGITDSAPVARARELGMTVVVTDHHLPGETLPEAHAVCDPRLAEGGPCDDLAGVG
VAFMLVVALNRLLPGDPVDVRPLLDLVALGTIADIVKLTGQNRILVKNGLLVIKEAKRPG
MAALKVVSDYDRRAELGAGQIGFHLAPRINAAGRMGDPEKALRLLLAKDFDSAMPIAEEL
NAINMERRRQEQEISEQAFEQAESMRHMAGLVLHADHWHPGIIGIVASRVVEKYYRPTLL
LCTPESSGGLLKGSGRSISEFNLYDGLADVADVLEGFGGHSQAAGVSLKPENLKALRERF
NDRVIEKLGPKPLTPTLKLDHELAFSNINNTLLKELEMLQPYGMGNPEPVFATKPVRVAE
HALFGREGEHVKLVLEDTETGTKLPGKAWRMADTLTRAVHGRTMRFAFTPKIDRFRGIPT
IDLRIRDWVF
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggaattgaacgtttcgccgcttattgtggagattctctggaatcggggtttg
tccgacgtggacgagatggaccgctttttgagcccgttgcttcggcacatggccaacccc
gccgaggtgcccggcctgaccgaggccgccgagaccctggcccgtggccttgacgagggc
cgcaagctggccgtctggggcgattacgacgtggacggcatcacggccacggcggtaatc
aaggagtttttcgccatgcgcggcatggaggtcatgcaccacctgccaaaccgcatggag
gaaggatacggcatgaatgttcccggcgtggagcatctccacgagcagggcgcgaccatg
ttgctgacagtggactgcggcatcacggacagcgcgcccgtggcccgggccagggagctg
ggcatgaccgtggtggtcacggaccatcacctgcccggcgagaccctgcccgaagcccat
gcggtgtgcgatccgcgcctcgcggaaggcgggccatgcgacgatctggccggggtgggc
gtggccttcatgctcgtcgtggccctgaaccggctcctgccgggcgatcccgtggacgtg
cgtccgctgctcgaccttgtggcgttggggaccatcgccgacatcgtcaagctgaccggc
cagaaccgtattttggtcaagaacgggctgctggtcatcaaggaggccaaacggcccggc
atggccgctctcaaggtggtcagcgattacgaccgccgcgccgagttgggggctgggcag
atagggttccaccttgccccgcggatcaatgccgccggacgcatgggcgatcccgagaag
gcgttgcgcctgctgctcgccaaggatttcgattcggccatgcccatcgccgaggagctc
aacgccatcaatatggaacgccgccgccaggagcaggagatttccgagcaggccttcgag
caggccgagtccatgcgccacatggccggactggtcctgcacgcggaccattggcatccg
ggaatcataggcatcgtggcttcgcgggtggtcgagaaatactaccggcccacgctgctg
ctctgcacgcccgagtcctcgggaggactgctcaaggggtccggccggagcatctccgag
ttcaatctttacgacgggctggccgacgtggccgacgtgctggaaggattcggaggacac
tcccaggccgcgggcgtctccctcaagccggagaatctcaaggccctgcgcgagcggttc
aacgatcgggtcatcgagaagctcggtcccaagccgcttacgcccacgctcaagctcgac
catgagctggccttttccaacatcaacaacaccttgcttaaggaactggagatgcttcag
ccctacggcatgggcaatcccgagccggtcttcgccaccaagccggtgcgtgtggccgaa
cacgccctgttcggcagggagggagagcacgtcaagttggtcctggaggacaccgagacc
ggtaccaagttgcccggtaaggcatggcgcatggccgataccctgacccgcgcggttcac
ggccggaccatgcggtttgccttcacccccaagatcgaccgttttcggggcatccccacc
atcgatctgcgaatccgggactgggtgttctag
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