Pseudodesulfovibrio thermohalotolerans: LF599_05765
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Entry
LF599_05765 CDS
T09613
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LF599_05765 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pthe03021
]
LF599_05765 (rpoC)
03400 DNA repair and recombination proteins [BR:
pthe03400
]
LF599_05765 (rpoC)
Enzymes [BR:
pthe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LF599_05765 (rpoC)
Transcription machinery [BR:
pthe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LF599_05765 (rpoC)
DNA repair and recombination proteins [BR:
pthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LF599_05765 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WFS63667
LinkDB
All DBs
Position
1256116..1260270
Genome browser
AA seq
1384 aa
AA seq
DB search
MTLDDLFTLRGAPNAAAQGRNLKAIQISIASPETIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDITMADLEKVLYFDSYIVLDPGETPLKTHQVVSEDQYFQVIDHFGED
ALTVGMGAETVRTMLQALDLPTLRAELREESQTTRSQTKKKKITKRLKIVEAFLESGNKP
EWMIMEVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYSELEKREIATTIKSAKKMVEREDLVVWDILED
VVREYPIMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSSNNILSPSNGSPIINPSQDIVLGLYYLTTPRSFEKGEGMIFSSPEEVI
SAYDFGAVGIHASIKVRINGEIVETTTGRIIVSELLPEKVPFELVNTVLNKKNIAALVSG
AYRLAGTKATVILCDRIKDLGYEFATRAGVTIGVKDLKIPDNKPKMLATANAEVDEIENQ
FQDGIITRTEKYNKVVDVWTKVTNDISNEMMKEMSTDVLTDPKTGKTEVNSSFNPIYMMA
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITASFREGLSVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVTVSELDCGTVDGLELTHYIKGGEIKQRLAERVLGRVTMF
DTYDEETGELVIPANTMIDDEYAKKLDASGVNSIVIRSGLTCKAAHGVCAMCYGRDLARG
HLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIESSSIESQHNGRVITSRMRTV
VNSEGDKMVLGKSCQVGIVDEQGREREKYVLPSGARLLVDEGQEVKKGTPLAEWDPYMEP
FIVDVSGTIKFKDIIEGKTVQEDRTSKASFTIMEYRTTNFRPAVTLLGEDGKAVHRPGTD
IDANFAMPVGAILMVKDGDTVRAGDVIARKPRESSKTKDIVGGLPRVAELFEVRKPKDLG
VLSSIDGIVTFGAETKGKRKVVVTPETGDAQEFLIPKGKHITVQESDFVEAGDLLTEGSP
ELHDILRIKGEKFLARYLVEEIQDVYRFQGVNINDKHIEIIVRQMLKKVSILNPNSTSFL
MGEQVDKQRFMEENSRVIAEGGTPAVAETLVLGITQASLSTDSFISAASFQETTKVLTEA
SLKGKSDQLRGLKENVIVGRLVPAGTGFRKYTDAEISVPDQTERPDKFLEELEERPLLVD
VPSA
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggacgatctgttcaccttgcgtggagcgccgaatgcggctgcccaaggccgt
aacctgaaggctatccagatatccatcgcctcgcccgagaccattcgcgagtggtcctac
ggcgaggtcaagaagcccgagaccatcaactaccgaaccttcaaaccggagcgtgatggt
cttttctgcgccaaaatcttcggtcccgtgaaggactacgagtgcaactgcggtaaatac
aagcgcatgaagcaccgtggcattgtctgcgaaaaatgcggcgttgaggtcatcgcttcc
aaggttcgccgcgagcgcatgggtcatatcgaactggccgcgcctgtggcgcacatctgg
ttcctgaagacgctgccgtccaagatcggcacgctgctcgacatcaccatggccgacctg
gaaaaggtcctgtacttcgactcctacatcgtgcttgatccgggcgagaccccgctcaag
acgcaccaggtggtcagcgaggatcagtacttccaggtcatcgaccatttcggtgaagac
gccctgaccgtgggcatgggcgcggaaaccgttcgcaccatgctccaggccctcgatctg
ccgaccctgcgcgccgaattgcgcgaggagtcccagaccacccggtcgcagaccaagaag
aagaaaatcaccaagcgactcaagatcgtcgaggccttcctggagtccggcaacaagccc
gagtggatgattatggaagtgattcccatcattccgcccgagctgcgtccgttggttcct
ctggatggcggccgtttcgccacctccgacctcaacgatctgtaccgccgcgtcatcaac
cgtaacaaccggttgaaaaggctgcttgaactcggcgcgcccgagatcatcatccgcaac
gagaagcgcatgttgcaggaggccgtcgacgcattgttcgacaacggccgccgcggccgc
gccatcaccggcaccaacggccgtccgctcaagtccctgtccgacatgatcaagggcaag
cagggccggttccgccagaatctgctcggcaagcgcgtcgactactccggccgttcggtc
atcgttgtcggcccgaagctgaagctgcaccagtgcggcctgcccaagaagatggccctg
gaactcttcaagccgttcatctattccgagcttgagaagcgcgaaatcgccaccaccatc
aagtcggcgaagaagatggtcgagcgcgaagacctggtcgtctgggatatcctggaagac
gtggtccgcgaatacccgatcatgctcaaccgcgccccgaccctgcaccgcctcggcatt
caggccttcgagccgctgctcgtcgagggcaaggccatccagctgcacccgctcgtctgt
tccgcatacaacgcggactttgacggtgaccagatggctgtgcacgttccgctttcggtc
gaggcgcagatcgagtgccgcgtgctgatgatgtcctccaacaatatcctcagcccgtcc
aacggttcgccgatcatcaacccgtcgcaggatatcgtcctcggcttgtattacctgacc
acgccgcgttccttcgagaagggcgagggcatgatcttctcttctccggaagaggttatc
tccgcctacgacttcggtgcggtgggaatccacgccagcatcaaggtgcgcatcaacggc
gagatcgtcgagaccacaaccggccgcattatcgtttccgagctgctgcctgagaaggtc
ccgttcgagctggtcaacaccgtcctgaacaagaagaacatcgctgccctggtttccggc
gcctaccgtctggcgggcaccaaggccacggtcattctttgtgaccgcatcaaggacctg
ggttacgagttcgccacccgcgccggtgtgaccatcggcgtcaaagacctcaagatcccg
gacaacaagccgaagatgctggccacggccaacgccgaggtggacgagatcgagaaccag
ttccaggacggcatcatcacccgtaccgagaaatacaacaaggtcgtcgacgtctggacc
aaggtgaccaacgacatctccaacgaaatgatgaaggagatgtccaccgacgttctgacc
gatccgaagacgggcaagaccgaagtcaattcgagcttcaacccgatctacatgatggcc
acgtccggcgcccgaggcaaccaggaccagatgcgtcagttggccggtatgcgcggactc
atggccaagccttcgggcgagatcatcgagaccccgatcaccgcgtccttccgcgaaggt
ctctcggtcctgcagtacttcatctccacccacggcgcacgaaagggtctggccgatacc
gcgctcaagaccgccaactccggttacctgacccgtcgtctggttgacgtcgtccaggat
gtgaccgtgtccgaactggactgcggcaccgtggacggtctggaactgactcactacatc
aagggcggcgagatcaagcagcgcctggctgagcgcgttctcggccgcgtgaccatgttc
gatacctatgacgaggagaccggcgagctggtcatccccgccaacaccatgatcgacgac
gaatacgccaagaagctcgacgcttccggcgtgaactccatcgtcatccgctccggcctg
acctgcaaggccgcgcacggcgtctgcgccatgtgctacggccgagacctggcccgcggg
catctggtcaacgtcggtgagaccgtcggcatcatcgccgcacagtccatcggcgagccc
ggtactcagttgaccatgcgtactttccacatcggtggcaccgcatccaaggaaatcgag
tcctccagcatcgaatcgcagcacaacggccgcgtcatcacttcgcgtatgcgcaccgtc
gtcaactccgagggcgacaagatggtgctcggcaagagctgccaggtcggcattgtcgac
gagcagggccgcgagcgcgagaagtacgtgctgccttccggcgcgcgtctgctggtcgat
gaagggcaggaggtcaagaagggcaccccgctggcggaatgggatccatacatggagccg
ttcatcgtcgacgtgtccggtaccatcaagttcaaggacatcatcgaagggaagaccgtc
caggaggaccgtacctccaaggcgtccttcaccatcatggaataccgcacgaccaacttc
cgtccggccgtgaccctgttgggcgaggacggcaaggccgtgcatcggcccggtacggat
atcgatgccaacttcgccatgcctgtcggcgccattctcatggtcaaggacggcgacacg
gtccgagcgggtgacgtcattgcgcgtaagccgcgtgagtcctccaagaccaaggacatc
gtcggtggtctgccgcgcgttgccgagctcttcgaagtgcgcaagcccaaggatctgggc
gtgctttcttccatcgacggtattgtcaccttcggtgccgagaccaagggcaagcgcaag
gtcgtcgttactcccgagaccggcgatgctcaggaattcctcattcccaaaggcaagcac
atcaccgtccaggagtccgacttcgtcgaggccggcgatctgctgaccgaaggctccccg
gagctgcacgacatcctgcggatcaagggcgagaagttcctggcccgctatcttgtcgag
gaaatccaggacgtgtaccgcttccagggcgtcaacatcaacgacaagcacattgaaatc
atcgtgcgtcagatgctcaagaaggtctccattctgaatccgaattccacgtctttcctc
atgggagagcaggtggacaagcagcggttcatggaggagaactccagggtcattgccgag
ggcggaacgcccgccgtggccgaaaccctggtgcttggcatcacgcaggcctcgctgtcc
acggactccttcatttcggcagcttcgttccaggagaccaccaaggtcctgaccgaggcg
tcgctgaagggcaagtccgaccagctgcgcggcctgaaagaaaacgttatcgtgggtcgg
ttggtgcccgccggaaccggtttccgcaagtacacggatgccgagatcagcgttcccgac
cagaccgaacgtcccgacaaattcctggaggagttggaggaaagaccgcttctcgtggac
gtgccgtcggcgtag
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