Pseudodesulfovibrio thermohalotolerans: LF599_05920
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Entry
LF599_05920 CDS
T09613
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LF599_05920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pthe03021
]
LF599_05920
03400 DNA repair and recombination proteins [BR:
pthe03400
]
LF599_05920
Enzymes [BR:
pthe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LF599_05920
Transcription machinery [BR:
pthe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LF599_05920
DNA repair and recombination proteins [BR:
pthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LF599_05920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
WFS63698
LinkDB
All DBs
Position
1276287..1277327
Genome browser
AA seq
346 aa
AA seq
DB search
MLIENGDKLINTRNWSELVKPEALSRDPKSSKTYGKFICEPLERGYATTIGNAMRRVLLS
SMQGCAIVSASIEGVQHEFTTMPGVLEDMTEVVLNLKQVRIAMTTDEPQRLVLEADKKGQ
VTAGMIQENQNVTILNKDQLIATLTENRPLKMELEVRMGKGYVPADMHEGLTDEIGSMVL
DASYSPVKKVAYSVEQARVGQMTNYDKLILEVWTDGSVTPEDACAYSAKILKDQLSVFIN
FDESASETHEEEDDSIDLNPNLFKSIDELELSVRATNCLKAANIQLVGELVQRTEQTMLK
TKNFGRKSLDEIRRVLDGMALKFGMSVEDFDKKYQEWLKRKEKNEA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgagaacggcgacaaactcatcaacacccgcaattggagcgaattggtcaag
cccgaggctctctcgcgcgatcccaagtcctccaagacgtacggtaaattcatctgcgaa
cccctggagcgcggctatgccaccaccatcggcaacgccatgcgccgggttcttctctcc
tccatgcaggggtgtgccatcgtgtccgcctccattgagggagtgcagcatgaattcact
acgatgcccggggttcttgaggatatgaccgaggtagtgcttaacctcaagcaggttcgc
atagccatgaccacggacgagcctcagcgcttggtcctcgaagccgacaaaaaggggcag
gtcacggcaggtatgatccaggagaatcagaatgtcaccattctgaacaaggatcagctt
atcgccaccctgaccgagaatcgccccctcaagatggagttggaagtccgcatgggcaaa
ggatacgttccggccgacatgcatgagggactgaccgacgaaatcggctccatggtcctc
gacgccagctactcccccgtcaagaaggtcgcatactccgtcgaacaggcgcgtgtcggc
cagatgacgaactatgacaaactgatcctggaagtgtggaccgacggttccgtcactccc
gaggatgcctgtgcatacagcgccaagatccttaaggaccagctctcggtgttcatcaac
ttcgatgaatccgcttccgaaactcatgaggaagaagacgattccatcgatctgaacccg
aacctcttcaagtccattgacgagctcgaactctcggttcgcgccaccaactgcttgaag
gccgccaacattcagcttgtgggcgaactggtccagcgtaccgaacagaccatgctcaag
accaagaacttcggccgcaagtctctggacgaaattcgccgtgttctggacggcatggcc
ctcaagtttggcatgtcggtcgaggattttgacaagaaataccaggaatggttgaagagg
aaagagaaaaatgaggcatag
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