Pseudodesulfovibrio thermohalotolerans: LF599_06335
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Entry
LF599_06335 CDS
T09613
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF599_06335 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pthe03019
]
LF599_06335 (pnp)
03016 Transfer RNA biogenesis [BR:
pthe03016
]
LF599_06335 (pnp)
Enzymes [BR:
pthe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LF599_06335 (pnp)
Messenger RNA biogenesis [BR:
pthe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LF599_06335 (pnp)
Transfer RNA biogenesis [BR:
pthe03016
]
Prokaryotic type
tRNA degradation factors
LF599_06335 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
Motif
Other DBs
NCBI-ProteinID:
WFS63779
LinkDB
All DBs
Position
complement(1364562..1366775)
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AA seq
737 aa
AA seq
DB search
MTMIPFDATSVTATVGDLDITIETGKYARQASGAVTISSGSTTVLVTAVTQPLAEDRGFF
PLTCNYQEMAYAAGRVPGNYFRREGRPSEHETLVSRLIDRPIRPLFAKGFSDEVQIIATV
LSADKHVNPDVLALTGASAACHISKMPFLGPIVGARVGYVDGEFVLYPTYKGIEERSSLN
LIFAATREAMVMVEGGGNFVSEDMVADALAWGHEQVGPLFDIQDELRDKVGVPKIEVTAP
ERDEEVAEYLGEIITDDLKKALTTPEKLVRYAAKDAAKKKAKEAVAEKFPDDSAKLAEVD
NIVGDMTKKFVRERIVKEGLRIDGRDTTTVRPLSIEVGVLQQTHGSVLFRRGETCSLAVA
TLGSTRDEQRYDSLLGDATKRFMLHYNFPPYCVGEARMLRGTSRREVGHGALAERALSPV
LPSPEEFPFTIRVVSEIMESNGSSSMASVCGATLSLMDAGVPISDPVAGIAMGLCKEDDQ
YFVLTDILGDEDALGDMDFKVAGTRDGITAIQMDIKIGGIPQEVLKKALYQAKEARTHIL
DHMAEVLEKPRAELSTLAPQMAVVYIDPEKIRSVIGPGGKNIKAITAETEADIDIEDSGK
ISIFAPTMASMEKAKEMVLYYDQKPEPGKNYKGVVRKILEVGALVEILPGQEGMLHISQL
DFDRVERVEDIVQLGQEVMVKCISLEPGGRIRLSRKAWLMEEAGQEVNLDDFKRPAPRNN
DRGGRNDRGDRGGRRRR
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgattcctttcgacgccaccagcgttaccgcgacggtcggcgatctcgacatc
accatcgaaaccggaaaatacgctcgccaagcctccggcgcggtgaccatttcttccgga
agcaccactgttctggtcaccgccgtgacccagcccctggctgaagaccggggcttcttc
ccgctgacctgcaactatcaggaaatggcttacgccgccggccgcgtgccgggcaactac
ttccgccgcgagggccgtccctccgagcatgagaccctggtctcccggctcatcgaccgt
cccatccgtcccttgttcgccaagggcttctccgacgaagtgcagatcatcgccaccgtc
ctgtccgccgacaagcacgtcaacccggacgttctggccctgaccggcgcttccgccgcc
tgccacatttccaagatgcccttcctcggccctatcgtcggcgcccgcgtgggctacgtg
gacggcgagttcgtcctctaccccacctacaagggcattgaggagcgttcgtccctgaac
ctgatcttcgccgcaacccgcgaggccatggtcatggtcgaaggcggcggcaacttcgtc
tctgaagacatggtggccgacgccctggcctggggccacgagcaggttggaccgctcttt
gacattcaggatgagctccgcgacaaggtcggcgtgcccaagatcgaagtgaccgctccc
gagcgcgacgaggaagtggccgagtacctcggcgagatcatcaccgatgacctcaagaag
gccctgaccacccccgagaagctggtccgctacgccgccaaggacgctgccaagaagaag
gccaaggaagccgttgccgagaaattccccgacgattccgccaagctggccgaggtcgac
aacatcgtcggcgacatgaccaagaagttcgtccgcgaacgcatcgtcaaggaaggtctg
cgcatcgacggccgtgacaccaccaccgtccgtccgctgtccatcgaagtgggcgttctc
cagcagacccacggctcagtcctgttccgccgcggcgaaacctgctccctggccgtcgcc
accctgggttccacccgtgacgagcagcgttacgactccctgctcggcgacgccaccaag
cgtttcatgctccactacaacttcccgccctactgcgtcggtgaagcccgcatgttgcgc
ggcacctcccgccgtgaggtgggccacggagccctagccgaacgcgccctttctccggtg
ctgcccagccccgaggaattcccgttcaccatccgcgtggtctccgaaatcatggagtcc
aacggttcctcctccatggcttccgtgtgcggcgcaaccctgtccctcatggatgcgggc
gtgcccatctccgatcccgtggccggtatcgccatgggtctttgcaaggaagacgaccag
tacttcgtcctgaccgacatcctcggcgacgaggacgccctgggcgacatggacttcaag
gttgcgggcacccgtgacggcatcaccgccatccagatggacatcaagatcggcggcatc
ccacaggaagtcctcaagaaggccctgtaccaggccaaggaagcccggacccacatcctc
gaccacatggccgaggtgctggaaaagccgcgtgccgaactgtccaccctggccccgcaa
atggccgtggtctacatcgatcccgaaaagatccgctccgtcatcggacccggcggcaag
aacatcaaggccatcaccgccgagaccgaagccgacatcgacatcgaggattccggcaag
atctccatcttcgccccgaccatggcttccatggaaaaggccaaggaaatggtgctctac
tacgaccagaagcctgaacccggcaagaactacaagggcgtcgtgcgcaagatccttgag
gtcggcgcactcgtcgaaattctgcccggccaggaaggcatgttgcatatctcccagctc
gacttcgaccgtgtggaacgcgtggaagacatcgttcagctcggccaggaagtcatggtg
aagtgcatctccttggagcccggcggacgcatccgcctgtcccgtaaggcctggctcatg
gaagaggccggacaggaggtcaacctggacgacttcaagcgtcccgctccgcgcaacaac
gacagaggcggacgcaacgaccgcggtgaccgcggtggacgccgccgccgttag
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