Pseudodesulfovibrio thermohalotolerans: LF599_08020
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Entry
LF599_08020 CDS
T09613
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LF599_08020 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pthe03400
]
LF599_08020 (uvrB)
DNA repair and recombination proteins [BR:
pthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF599_08020 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LF599_08020 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_19
AAA
AAA_16
Snapin_Pallidin
P-loop_SecA
DUF7934
SLFN-g3_helicase
Kinesin
DUF87
Motif
Other DBs
NCBI-ProteinID:
WFS64093
LinkDB
All DBs
Position
1709353..1711356
Genome browser
AA seq
667 aa
AA seq
DB search
MPDFKLVSEYTLKGDQPQAVAELVAGLGAGVRDQVLLGATGTGKTFTMANVVAELNRPAL
VLAPNKTLAAQLYTEFRALFPDNAVEYFVSYYDYYQPEAYLPHSDVYIEKDSSINDDIDK
LRHAATHALLTRKDVLIVASVSCIYGLGSPDFYAKMVIPVEEGQTMAMESLLERLVEIHY
ERNDYDFHRGTFRVRGDVVEIIPAYSREKALRIEFFGDEIDSISETDPLTGEVKDRLRKT
VIYPGSHFVSDRDNLDRAVADIRDELQSRLSFLQRNSKLVEAQRLEQRTMYDLETIEELG
YCNGIENYSRHLDGRVEGQPPATLLDYFPDDFILFVDESHIALPQVGGMYRGDRSRKTTL
VDFGFRLPSALDNRPLNYEEFQERIHQAVYVSATPGPLELDLAQGVVVEQIIRPTGLLDP
QLEVRKTQGQIDDLLAECKKRQTKDERVLVTTLTKRMAEDLNDYLNQMGVQSRYLHSDID
TLERMAIIQALRAGEFFVLVGINLLREGLDIPEVSLVAILDGDKEGFLRSTRSLIQTFGR
AARNSEGRVILYADKVTDSMAEAMGETERRRARQEEYNLEHGITPTTIRKKVENLFGELS
GGGDRSGAVAMAAEDGVYYGADQKTLNKTVKRLEREMREAAKELEFERAAELRDRIARLR
ERMLELG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgccggatttcaaactcgtcagcgaatatactctcaagggcgatcagccccaggccgtt
gccgaactcgtcgcgggcctgggggcgggcgtcagggatcaggtcctgctcggcgccacg
ggcacgggcaaaaccttcaccatggccaatgtggtggccgagcttaaccgtccggctctg
gttctggctcccaacaagaccttggcggcgcagctctacaccgagttccgggctcttttc
ccggacaatgctgtcgaatatttcgtcagttattacgattactaccagcctgaagcctac
ctgccgcactcggacgtctacatcgagaaggattcgtccatcaacgacgatatcgacaag
ctgcgtcatgcggccacccatgcgctcctgacccgcaaggatgtgctcatcgtggcctcg
gtctcctgcatttatggattgggctcgcctgatttctacgccaagatggtcattcccgtg
gaggagggccagaccatggccatggagtccctgctcgaacgattggtggaaattcactac
gagcgcaacgactacgatttccatcgcggcaccttccgggtgcggggcgacgtggtcgag
atcatccccgcctacagccgggaaaaggcgttgcgcatcgaatttttcggcgatgagatt
gattccatctccgagaccgatccgctcacgggcgaggtcaaggaccggctgcggaagacc
gtcatctaccccggctcccacttcgtttcggaccgcgacaacctggaccgggccgtggcc
gatatccgcgacgagttgcagtcccgcctgtcttttctccagaggaacagtaagttggtg
gaggcccagcgtctggaacagcggaccatgtacgacctggagaccattgaggaactgggc
tactgcaacggcatcgagaactattcgcgccacctggacggccgcgtcgaggggcagcct
cccgcgaccctgctcgactatttcccggacgattttatcctgttcgtggacgagtctcat
atcgccctgccgcaggtggggggcatgtatcgcggcgaccgctcgcgcaaaaccacgctc
gtggatttcggtttccgtctgccgtccgcgctcgacaaccggcctttgaattacgaggag
tttcaggagcgcattcatcaggccgtgtacgtttcggccacgcccggcccgcttgagctc
gacttggctcagggcgttgtggtggagcagatcatccgaccaacggggctgctcgatccg
cagttggaggtcaggaagacgcagggacagattgacgatttgctggcggagtgcaaaaaa
aggcagacgaaggacgagcgtgtcctggtgaccacgctgaccaagcgcatggccgaggac
ctgaacgattatctgaatcagatgggcgttcagtcccggtacctgcattcggatatcgac
acgctggaacgcatggccatcattcaggcgcttcgggccggtgagtttttcgtcctggtg
ggcatcaaccttctgcgcgaggggctggacatccccgaggtgtccctggtggccattctg
gatggtgacaaggaagggttcctgcgctccacgcgttcgctcatccagactttcgggcgg
gccgcccggaactcggaggggcgggttatcctgtacgcggacaaggtcaccgattccatg
gccgaggccatgggcgagaccgagcgcaggcgggccaggcaggaggagtacaacctggag
cacggcatcacgccgaccaccatccgcaagaaggtggagaacctcttcggtgaactttca
ggcggcggcgaccggagcggggccgtggccatggccgccgaggacggcgtgtactacggg
gcggaccagaagaccctgaacaagacggtcaagcggctggagcgggaaatgcgcgaggcc
gccaaggaactggagttcgagcgggcggcggagcttagggaccgcatcgcccgacttcgc
gagcgcatgttggaattggggtaa
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