Pseudodesulfovibrio thermohalotolerans: LF599_08435
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Entry
LF599_08435 CDS
T09613
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LF599_08435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pthe03400
]
LF599_08435 (mfd)
Enzymes [BR:
pthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF599_08435 (mfd)
DNA repair and recombination proteins [BR:
pthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LF599_08435 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WFS64170
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All DBs
Position
1789609..1793094
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AA seq
1161 aa
AA seq
DB search
MPAIYPKDIADFMKGTGDSVRVFKSGPGSQALLAGSLLAAGTDVVLVVPGVAEFREMRAL
LTLLSSGGQPGPEQPAWEREWVFLPPYHSRNPESQGWSERWAALFGLVYRDGPRGVLMTA
DNLLPHWPDEMVLRENWVTLAKGEEMSPDILLEQLVSWGYVRRKLVSDPGDMAMRGDILD
IHAPGYELPVRLEFFGDVLEEIRLFDPASQRSRSDLDEAVLLPVAPCITTGDRTFRARDK
WEKLRKTGEISAAQEQALSERLDRDDGFIWPGLYYDSPVGLEAFLPKDAVWLLSSGGTLR
ARLEDREQAWRDFLKDEERDKGISLPRRFVVRSHDVSRKAWSSARQMVFEELTIGREKNG
IELPETPYSDFSDMFWRPEASRRPWAALMGGLKEWQAAGETTILSFRTQRSRTKFLNLAE
QENLSIGLEYAPDRQGLFALVSPLRKGMEIGWNRTRILGEEVLQPQAARVHVGRDKAFKG
LERYDDLSEGDLLVHRDYGLSQFGGLHHMALGEGANDYLLLYFSGEDKLYLPVDRLNLVQ
RFKGPEGAKQPSLDKLGGSRWAKTTAKVRKAIEKIAHELVEMYAFRRVAKGFGYGPLDEM
YAEFEATFGFEETPDQEKAVNDVFRDMEKSEPMDRLVCGDVGFGKTEVALRAAFRAAQEG
RQTALLCPTTVLAEQHYQTFTKRMEGFPVRVGLLSRFVTAKRQKTVLEAAARGEIDILIG
THRILSKDVELPNLGLLVLDEEQRFGVKHKEKLKHFRQNIDVLTLTATPIPRTLQLSLSG
IRGLSVIETPPVDRKPVETGIMERDELELKAVLRRELDRGGQVYWVYNRVNGLERVTEFV
RGLVPDAKVGMAHGRMSEKALEEAMRDFWHGELDVLVCTAIVESGLDFPNANTLIVDQAQ
LFGLGQLYQLRGRVGRSERQAYAYFVVPSIKDISEIVRKRLRIILDMDYLGAGFKVAMED
LRLRGAGNILGEAQSGQIAKIGLDLFLEMLEEEVARVRGEEHARASEPELNFVFEAHIPG
GYIPDSRERLRYYRGLSSAASDMEMREYEAEIRDRFGPLPEELDAFFGVLRLKRTLSRLQ
AARAELYPGRAVITWKDNAIAVNPEKLIRWVGERGETARLIPPAKLEIRYEDAPSMREAL
ETAAADLEGILDVKTVPPNGG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgccagccatatatcctaaggacatagccgacttcatgaaggggaccggggattcggtc
cgcgtctttaagagcggcccgggctctcaggccctgctcgcgggctccctgctggcggcc
ggaaccgacgtggttctggttgtgcccggcgtggccgagttccgtgagatgcgggctctt
ctgactctgctttcaagcggcgggcaacccggaccggaacagcccgcctgggagcgggag
tgggtcttcctgccgccataccattctcgcaatccggaatcacaggggtggagcgagcgg
tgggccgccctgttcgggttggtgtaccgggacggtccgcgcggcgtgcttatgaccgcc
gacaacctgctgccgcattggcccgacgagatggtcctgcgggagaactgggtcaccctt
gccaagggtgaggagatgtccccggatattcttctggagcaactggtctcatggggctat
gtgcgccgcaagttggtgtccgatcccggagatatggccatgcgcggcgatatcctggat
atccacgcgcccggctatgagctgcctgtccggctggaattttttggcgacgtgcttgag
gaaatccggctgttcgacccggccagtcagcgttcccggtcggatctcgacgaggccgtg
cttctgcccgtggcgccgtgcatcaccaccggggacaggaccttccgcgcccgcgacaag
tgggagaagcttcggaagaccggcgaaatatccgcggcccaggagcaggcgttgtccgag
cggctggaccgggacgacgggtttatctggccgggcctgtattatgattcgccggtgggg
cttgaagcctttttgcccaaggacgcggtctggctgctttcgtcgggtgggactctgcgg
gcgcggcttgaggaccgcgagcaggcgtggcgcgattttctgaaggacgaggagcgggac
aagggcataagcctgccccggcggttcgtcgttcgttcccatgacgtgagccgcaaggcg
tggagttccgcccgccagatggtcttcgaagaattgactatcggcagagagaagaacggc
attgaactgcccgagacgccttacagcgatttctcggatatgttttggcgtcccgaagcc
tcccggcggccatgggcagcccttatgggcggcctcaaggagtggcaggccgcaggcgaa
acgaccattttgagtttccgtacccaacggtccagaaccaagttcctgaatctggccgag
caggagaatctgtccatcggcctggaatacgcgccggaccggcaggggctcttcgccctg
gtctcccccttgcgcaagggcatggagatcggctggaaccggacccgcatcctgggcgag
gaggtccttcagcctcaggccgccagggtgcatgtcgggcgggacaaggcgttcaaggga
ttggagcggtacgacgacctgtccgagggcgacctgctcgtccaccgggattacggactg
tcccagttcggcggattgcatcacatggcccttggcgaaggggccaacgactacctgctt
ctgtatttttccggcgaggacaagctgtatcttcccgtggaccggctcaatctggtccag
cggttcaaggggccggaaggggccaagcagccttccctcgataagctcggcggcagccgg
tgggcgaagaccaccgccaaggtccgcaaggccattgagaagatcgctcacgaactcgtg
gagatgtacgcttttcgtcgggtggccaaggggttcggctacggccctctggacgagatg
tacgccgagttcgaggccaccttcggtttcgaggaaactccggaccaggaaaaggccgtc
aacgatgtcttccgggatatggagaaatccgagcccatggatcggctggtttgcggcgac
gtgggctttggcaaaaccgaggtggccctgcgcgccgcgttccgtgcggcccaggaaggc
cgtcagaccgcgttgctgtgcccgaccacggttctggccgagcagcattatcagaccttc
accaagcgtatggaaggattccccgtgcgagtggggctgctcagccggttcgttaccgcc
aagcggcagaagaccgtgctcgaagcggcggccaggggcgagatagacattcttatcggc
acgcaccgcattttgtccaaggatgtcgaactgcccaaccttggattgctcgtcctggac
gaggagcagcggttcggggtcaagcacaaggaaaaactcaagcatttcagacagaacatc
gacgtcctgacgttgaccgccacgcccattccgagaaccctgcaattgtcgctttcaggc
attcgcgggctgtccgtcattgagaccccgcctgtcgaccgcaagcccgtggagacgggc
attatggagcgcgacgaactggagctcaaggcggtgctgcgccgggagctggatcggggc
gggcaggtgtactgggtgtacaatcgggtcaacggcctggagcgggtgaccgagttcgtt
cgcggtcttgttccggacgccaaggtgggtatggcccacggccggatgagcgagaaggcg
ctggaagaagccatgcgcgacttctggcacggcgagctggacgtgctcgtctgcaccgcc
atcgtcgagtccgggctggacttccccaacgccaataccctgatcgtggaccaggcccag
cttttcggcctggggcagctctaccagcttcggggcagggtggggagaagcgagcggcag
gcctatgcctatttcgtggttccttccataaaggatatttccgaaatcgtgcgcaaacgc
ttgcgcatcattctggacatggattatctgggggcaggattcaaggtggccatggaggac
ttgcgccttcgaggcgcaggcaatatcctgggcgaggcccagtccgggcagatcgccaag
atcggtcttgatctctttctcgaaatgcttgaggaagaggtcgcccgtgtgcgcggcgag
gaacacgcccgggcttcggaaccggagctcaatttcgtattcgaggcgcatattcccggc
ggatacatcccggattcgcgggagcggcttcgctattacaggggcctttcctcggccgct
tccgatatggaaatgcgtgaatacgaagccgagattcgcgatcgcttcgggccgttgccc
gaagaactggacgctttcttcggcgtgctgcggctcaagcggactttgtcccggttgcag
gccgcgagggcggagctgtatccgggccgggcggttattacctggaaggacaacgccatt
gcggtcaatcccgagaagcttattcgttgggtcggtgagcggggggagactgccaggctc
attcctccggccaagctggaaatccgatatgaagatgcgccttccatgcgggaggcgctg
gaaaccgccgcagcggatctggaaggcatcctcgatgtcaaaaccgtgccgccgaacggc
ggataa
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