KEGG   Pseudodesulfovibrio thermohalotolerans: LF599_09200
Entry
LF599_09200       CDS       T09613                                 
Name
(GenBank) AAA family ATPase
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
pthe  Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pthe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LF599_09200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pthe03400]
    LF599_09200
Enzymes [BR:pthe01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LF599_09200
DNA repair and recombination proteins [BR:pthe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LF599_09200
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_RecD2 UvrD_C_2 SH3_13 AAA_11 Viral_helicase1 UvrD-helicase PIF1 Herpes_Helicase AAA_22 PhoH T2SSE SLFN-g3_helicase AAA AAA_16 DEAD NPHP3_N Zeta_toxin ATP_bind_1 UvrD_C P-loop_TraG
Other DBs
NCBI-ProteinID: WFS60860
LinkDB
Position
complement(1946780..1948792)
AA seq 670 aa
MEYDLELDTEGLAHYLANHPEIKGIGPVKARLIAERFGGDFDRVLIEQPETVSEAARLPL
AAVERLRDEWRKTREVNRAITWLAAFGLTHHQVTSLVKKLGNNVLGLLKADPYIIVREVR
GFGFKRVDKIARKMGTPKEHGTRIRAGLLHCVEESLNDGDCWVEYEELVDRANTLLVMDV
LDSRERIEKSLDALIEDGSLSCTSWGGRFLVAKPEIRRMEEDLAATLANGKRANPHFDGE
DDLQTLISHVAPQLNEGQRAAVLTVLKNSISLISGGAGSGKTFTVSAVTDIFEEHDLRVV
LAAPTGKAAKRLEQVVGHSASTIHRLLGFNGKNYVRGPEDPIDADVIIIDEVSMVDIPLA
WHLFRTIDLERTAVVLVGDHNQLPPVGPGSLLRDLTQSRAVPMVLLDTVVRQAGVLKENS
IAVLGGEIRKTSDPEDSGRRAWYVVDQFTDQSDAQRFLLELFENVLDERLRFHLRDDVQV
LTPTHKGPLGTRALNAELQRLIQKKLWGVEAPVPKPGRRPKFLVHDKVIQTRNNYELGVM
NGAMGKVTHIGRDGSMTIEFDGVPVDIESGSPNLQDLQLAYALTIHKAQGSEFPCAIVVV
HKAHSFMHHRNLLYTGVTRARKTAVIIGDRWGMQNCARKRRQDERKTFLSLLLAHPPVEP
SRASANSVEL
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaatacgacctcgagctggatacggaaggactcgcccactacttggccaatcatccg
gagatcaagggcatcgggccggtcaaggcgcgactcatcgccgaacgcttcggaggggat
ttcgaccgggtgctcattgaacaaccggaaaccgtatccgaagcggcgagacttccgctg
gcggcggtcgaaaggctgcgtgacgagtggcggaagaccagggaggtcaacagggcgatc
acctggctggccgctttcggtctgacccaccaccaggtgacaagcctcgtcaagaaactc
ggcaacaacgtcctcggcctgctcaaagccgacccgtacatcatcgtccgggaggtgcgc
ggcttcggattcaaacgggtggacaagatcgcccgaaagatgggcacgcccaaggagcac
ggtacgcgcatccgggccgggttgctccattgcgtggaggagtctctcaatgacggcgac
tgctgggtcgagtacgaggagttggtggaccgggccaacacgttgcttgtcatggatgtt
ctcgacagccgtgagcggatcgaaaagtcgctggacgcccttatagaggatggctcgctc
tcgtgtacatcctggggcggacggttccttgtggcgaaacccgagattcgccgaatggaa
gaggacctggcggcgactctcgcaaacggaaagcgggcgaatccccacttcgacggtgag
gacgacctgcaaacgctgatctcacacgtcgcgccgcagctaaacgaggggcaacgggcc
gccgttctgaccgtcctgaagaattccatctcgctcatttcgggcggcgcgggcagcggc
aagaccttcaccgtttcagccgtcacggacatattcgaggaacacgacctgcgagtggtc
ttggccgcgccgaccggaaaggccgccaagcggctcgagcaagtcgtcgggcattccgcg
agcaccattcaccgtctcctgggtttcaacggcaagaactatgtgcggggcccggaagat
cccatcgatgccgatgtcatcatcatcgacgaagtgtcgatggtcgacattccgctggcc
tggcacctgttcaggaccatcgacctggagcgtaccgcggtggttctcgtgggggaccat
aaccagctgcccccggtggggcccgggagcctgcttcgcgacctcacacagtcacgggcc
gtccccatggtgctgttggacacggtcgttcgtcaggcgggcgtgctcaaggaaaacagc
atagccgtgctgggcggcgagatccgcaagaccagtgacccggaagattccggtcgccgg
gcgtggtatgtggtcgatcaattcaccgaccaatccgacgcgcaaagattcctgctcgaa
ctgttcgagaacgtgctcgatgagcggctgagatttcacctccgggacgacgtccaggtc
ctgacaccgacgcacaagggcccactcggcaccagggcgctcaacgccgagcttcagagg
ctgatccagaagaagctgtggggcgtcgaggcaccggttccgaagccgggacgcagaccg
aagttcctcgtccacgacaaggtcattcagacccgcaacaattatgaactcggcgtgatg
aacggcgcgatgggcaaggtgacgcacataggccgggatggatcgatgaccatcgaattc
gacggagtgccggtagatattgaatcgggctcaccgaatttgcaggacctgcagttggct
tacgcgctcacgatacacaaggcccagggatctgagtttccgtgcgccatagtggtggtc
cacaaggcccactcgttcatgcatcaccgcaacctcctgtacaccggtgtgaccagggcc
aggaaaacggcggtcatcatcggggatcgctggggaatgcagaactgcgcccgaaagcgc
cggcaggatgaaagaaagacatttctctcgttgcttcttgcccatcctcccgtggaaccg
tcacgcgcttcggcgaattcggtcgagttgtag

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