Pseudodesulfovibrio thermohalotolerans: LF599_09850
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Entry
LF599_09850 CDS
T09613
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe02020
Two-component system
pthe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LF599_09850 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LF599_09850 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pthe03021
]
LF599_09850 (rpoN)
Transcription machinery [BR:
pthe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LF599_09850 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
WFS60984
LinkDB
All DBs
Position
complement(2071348..2072757)
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AA seq
469 aa
AA seq
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MGLELRQQLKLSQQLVMTPQLQQAIKLLQLSRLELLETVQQELLENPFLDETETETEVSD
KSEVLTESQAEEELVRNADWENYLGEFSSTSKQALSRDLEVPEEGVSFEARLASKPSLEG
HLNWQMRLSSFSESELAIGDVILGNLDSNGYLQASMEELTAMVQASEEEIESVLTRIQHL
DPVGVGARTPQECLLVQMEVLDYDDPILVSLVQDHLEDLEKNRYKPLARKFKISMEELKE
YLDLLQTLDPMPGANFSSTEPHYVSPDVFVYKYGEDFVIILNEDGMPRLQMNTFYMDSMK
GAADKEKEYFQEKMRSAAWLMKSLYQRQRTLYKVVESIVGFQRAFFEEGVTKLKPLILKE
VAEDIEMHESTVSRITTSKYVSTPHGIFELKFFFNSALDLNDGSQVGSESVKALIKQMIS
EEDTKKPLSDERIGEILQEKLEVNIARRTVAKYRSAMGIPSSSKRKQYF
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgggattggaacttcgacaacagctcaagctctcacagcaactggtcatgacgccccag
ttgcagcaggccatcaagctgctgcaactctcccgtcttgaactgttggagacggtgcag
caggaattgttggagaatcctttcctggatgagaccgaaaccgaaaccgaggtatcggac
aagtccgaggttctgaccgagtctcaggccgaagaggaactggtccgcaatgcggattgg
gagaactatctcggcgaattttcctccacctccaagcaggcgttgtcccgcgacctggaa
gtgcctgaggagggcgtttcctttgaggcgcggttggcttccaagccgtccctggaaggc
catctcaattggcagatgcggctttccagtttcagcgaaagcgagcttgcgattggtgat
gtcatcctcggcaatcttgattccaacggctatctccaggcttccatggaagagttgacc
gccatggttcaggcttccgaggaggagattgagagcgtactcactcgcattcagcatctc
gatcccgtcggggtgggcgcgcgcactccgcaggagtgtcttctggttcagatggaggtt
cttgattacgacgacccgatcctggtgtccctcgtgcaggaccatctggaagatctggaa
aagaaccgctacaagccccttgcccgcaagttcaagatttccatggaagagctcaaggag
tatttggatcttctccagaccctggaccccatgccgggcgccaatttttccagcactgag
ccgcactatgtcagccctgatgtcttcgtctacaaatacggggaagattttgtcatcatt
cttaatgaagatgggatgccccgtttgcagatgaacaccttctacatggactccatgaag
ggggcggccgacaaggaaaaggaatactttcaggaaaagatgcgctccgccgcgtggttg
atgaaaagtctgtaccagcggcagcgaaccttgtataaagtagttgaaagtattgtcggt
tttcaaagagcctttttcgaggaaggcgtaacaaagctcaaacccctgatcctcaaggag
gtggctgaggatatagagatgcacgagtccaccgtgagccggatcactaccagcaagtat
gtttcgactcctcatggaattttcgagttgaagttcttcttcaactcggccctggacctc
aatgacggttcccaggtgggttcggagagcgtcaaggcgctcatcaagcaaatgatctcg
gaagaagacacgaagaaaccgctcagtgacgagagaatcggcgaaatcctccaggaaaag
ctggaagtgaatatcgccaggcgcacggtcgccaaataccgctcggccatgggcattcct
tcttcttccaaacgcaagcagtatttctag
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