Pseudodesulfovibrio thermohalotolerans: LF599_12875
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Entry
LF599_12875 CDS
T09613
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF599_12875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pthe03019
]
LF599_12875
03009 Ribosome biogenesis [BR:
pthe03009
]
LF599_12875
Enzymes [BR:
pthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LF599_12875
Messenger RNA biogenesis [BR:
pthe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF599_12875
Ribosome biogenesis [BR:
pthe03009
]
Prokaryotic type
rRNA helicases
LF599_12875
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
WFS61557
LinkDB
All DBs
Position
2720928..2722688
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AA seq
586 aa
AA seq
DB search
MENDNLHPENGTDTPENGPAPITFETLPDTLRRACDRAGWDKLMPVQERAIPFLLDNQDV
MVQARTGSGKTGAFVLPLMEKLDPTRHTCQALVMVPTRELAKQVAQEARMLAGDELKVVA
VYGGVGYKEQLDAFREGANLVVGTPGRILDHLMRRNLTLDDLRVLIFDEADRMLSVGFYP
DMVEVKRYLPRNIDGAFMFSATFPPSVLRLAEEFMYKPEFLSLSSDETNVSAISHQFVEV
PAMGKERKLIKLIELENPSSAIIFSNTKRNVEFIAALLAQFGFDAEGLTSDLTQNKRERL
MTRIKEGKLRFLVATDVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTAIT
LVDVIQRIELERIASRFKIHFEEIKDPTDDDVTAIIGERLTAILEKRFRKLTNLQQERVS
RFLPIAKNYAEHEDSLSLLAMLLDELYQPTLHGKPAEPDTAPEPQRERPARNRGGRKRNP
ESAPREQRQAKPARDEDSDEFPAAKEQSRPPKAKGKRPAKPESKRPAKPEGKRPADPAES
AEPPKPAKPSKPVEARESAPADGEDGAPKARPKRRRRRRKRKPSGN
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgacaatctgcatcccgaaaacgggaccgacaccccggaaaacggccctgcg
ccgataacattcgaaaccctgcccgatacgcttcggcgggcctgcgaccgcgccggatgg
gacaagctcatgccggtccaggaacgcgccatacccttcctcctcgacaatcaggacgtc
atggtccaggcccggaccggctccggcaaaaccggcgcattcgtcctgccgctcatggaa
aagctcgacccgacacggcacacctgccaggctctggtcatggttcccacccgcgaactc
gccaaacaggtcgcccaggaggcgcggatgctggccggcgacgagctcaaggtggtggcc
gtgtacggcggcgtgggctacaaggaacagctcgacgccttccgcgaaggtgcgaacctg
gttgtcggaacccccggccgcattcttgaccacctcatgcgccgcaacctgaccctcgac
gacctgcgcgtgctcatcttcgacgaagcggaccggatgctctccgtgggcttctacccg
gacatggtcgaggtgaaacggtatctgccccgcaacatcgacggggccttcatgttctcg
gccaccttcccgcccagcgtgttgcgcctggccgaagagttcatgtacaagccggaattt
ctgagcctttcatcagacgaaaccaacgtctccgccatctcccaccagtttgtggaggtt
ccggccatgggcaaggagcgcaagctcatcaagctcatcgaactggaaaatccctcctcg
gccatcattttctccaacaccaagcggaacgtggagttcatcgccgccctgctggcccag
ttcgggttcgacgcggaagggctgacatcggacctgacccagaacaagcgcgagcggctc
atgacccgcatcaaggaaggcaagctccgcttcctggtggccactgacgttgccgcgcga
ggcatcgacatcccggagctgtcccacgtgttcatgatggagccgcccgaggaccccgag
tcctacgtgcaccgcgcgggccgcaccggccgcgccggggccacgggcacggccatcacc
ctggtggacgtcattcagcggatcgaactggagcgcatcgcctcccggttcaagattcac
tttgaagagatcaaggaccctaccgatgacgatgtgaccgccatcatcggggaacggctg
accgccatccttgaaaaaagattccgcaagctgaccaacctccaacaggagcgggtctcc
cgcttcctgcccatcgccaagaattacgctgagcatgaggactccctttccctgctggcc
atgctcctggacgagttgtaccagcccacactgcacggcaagcccgccgagcccgacacc
gcccccgaaccgcagcgcgaacggcccgcccgcaatcgcggcgggcgcaaacgcaacccc
gagagcgcgcccagggaacaacgccaggccaaacccgcccgggacgaggattccgacgaa
ttcccggcggccaaggaacagtcccgtccgcccaaggccaagggcaaacgcccggccaag
cccgagagcaaacgcccggccaagcccgaaggcaagcgcccggccgaccccgctgaatcc
gccgagcctcccaagcccgccaagccttccaagcccgtcgaagcgcgggaaagcgctccg
gctgacggtgaggacggcgctcccaaggccagacccaagcggcgcaggcgcagaagaaag
cgcaagccttccggcaactag
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