Pseudodesulfovibrio thermohalotolerans: LF599_15860
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Entry
LF599_15860 CDS
T09613
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Pathway
pthe03030
DNA replication
pthe03430
Mismatch repair
pthe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LF599_15860 (dnaE)
03430 Mismatch repair
LF599_15860 (dnaE)
03440 Homologous recombination
LF599_15860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pthe03032
]
LF599_15860 (dnaE)
03400 DNA repair and recombination proteins [BR:
pthe03400
]
LF599_15860 (dnaE)
Enzymes [BR:
pthe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LF599_15860 (dnaE)
DNA replication proteins [BR:
pthe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LF599_15860 (dnaE)
DNA repair and recombination proteins [BR:
pthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LF599_15860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WFS62117
LinkDB
All DBs
Position
3379389..3382943
Genome browser
AA seq
1184 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRIKDLLTRTKDLGMPAVAITDHGSMYGAVVFFMAAKELGI
KPIIGCEVYVAPGDLDDEDAHTRKDHGGGYHLVLLAKNQRGYKNLIKLVSTGYLDGFYYK
PRVCKHLLKKHSEGLIALSACLAGEVPRKLMNEGLAAGVETARVYESIFPGNFYLELQDN
GISKQTRLNELLIKCAEETGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRM
ETRELYFKTPEEMERAFAHVPEAIQNTQRIAEMCNLEIELGNYYFPEYELPEGVSMNEEF
DRLCREGLQRRLNTITYEVDEEKYWKRLDYELGVIKEMGFPAYFLIVQDFINWAKDHRIP
VGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVKY
CAQKYGTDRVAQITTFGTMKTKAVIKDVGRAMGMTFGETDRIAKLIPDDPAVMAKLLGVD
KAKITVPNAVKAVAELDDMVATDPKVAKLIDISTRLEGLCRHASTHAAGVVISNKPMTEY
LPLYKGKKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKTAPNLDTLH
LDDPDTFAIFAKGDTDGIFQVESSGMRKYLRMLRPDRFEDLVAMLALYRPGPLGMIGSHG
VSMVDEFIMRKHGEIEVTYPHPSLEETLKPTYGVMVYQEQVMATAMVIANYSLGEGDLLR
RAMGKKITEEMAKQRSRFLEGSRENGIDDAVANDIFDTMEKFAAYGFNKSHSAAYALISY
HTAYLKAHFPVEFMAALMSTEMNNTEKIIMYVNACRDMEITVRQPDINSGHARFSVKDGE
ILFAMAAIKNVGEEAINEIAAERTANGPFSNIFDFCERVNLRRVTKRVLESLIKAGALDC
FSCSRAALLEDLDKAVALGQKKAKEKESGMLNMFDMLGGGEKKDGSVTPTCSLCEEFDDR
EKLQLEKEVLGFFLSGHPLLAYRHDMQRLRTVTLEECKTIPNGTEVRVAVIIPDYKQFIT
RKGDPMAFCSAEDLTTYGEITMLPNVYAEARELLDADRPLLVLGKIDVREEPGGPEDAPK
SAKILADKVQLLADAAQGSDQPVSLWIGEKNAVDAHLNALKVILKRYPGTTSVNLGIITR
ESVINLRLGNGWKVFPGRDFWKEVEAWQNGDAKAYRAEAEAELL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaatttgttcatcttcacgtccataccgaatacagcctcctggacggcgccatc
cgaatcaaagacctgcttacccggaccaaggatttgggtatgccggccgtggccatcacc
gatcacgggtccatgtacggagccgtggtcttcttcatggccgcaaaggagttgggcatc
aagccgatcatcggttgcgaggtctacgtggccccgggcgatctggacgatgaggatgcg
cacactcgcaaggatcacggcggcggctaccacctggtcctgctggccaagaaccagcgc
gggtacaagaacctcatcaaactggtctccaccggctacctggacggcttttactataaa
ccccgtgtctgcaagcacttgctgaagaaacactccgaagggcttatagccctgtccgcc
tgtctggcgggcgaggtgccccgcaagctcatgaacgaggggctcgcggcgggcgtggaa
acggcacgggtctacgaatccatcttccccgggaatttctatctggagcttcaggacaac
ggcatatccaagcagacccggctcaacgagctgctcataaagtgcgccgaggaaaccggc
ctccccctggtggccaccaacgactgccactacctgaccgccgaggactacgaagcgcac
gacaccctgctctgcatccagacccagaccacggtggacgcggagaagcggttccgcatg
gaaacccgcgaactctacttcaagaccccggaagagatggagcgcgcgttcgcccacgtg
cccgaggccatccagaacacccagcgcatcgcggaaatgtgcaacctcgaaatcgagctg
ggcaactactatttcccggaatacgagctgcctgaaggcgtgtccatgaacgaggagttc
gaccgcctctgccgcgagggattgcaacgccgcctgaacaccatcacttatgaggtggac
gaggaaaaatactggaaacggctggactacgaactcggcgtcatcaaggagatgggcttc
ccggcgtacttcctcatcgttcaggacttcatcaactgggccaaggaccaccgcatcccg
gtcgggcccggccgtggttccgccgcaggctccatcgtggcctggtcgctcaagatcacc
aacctcgacccgctcccctacgatctgctgttcgaacgcttcctcaacgtggagcgcgta
tccatgccggatatcgacgtggacttctgcgagcggcgccgccttgaggtggtcaagtac
tgcgcccagaagtacggcacggaccgggtggctcagatcactaccttcggaaccatgaag
accaaggcggtcatcaaggacgtgggccgcgccatgggcatgacctttggcgagaccgac
cgcatcgccaagctcatccccgacgacccggcggtcatggccaagctgctcggcgttgac
aaggccaagatcaccgtgccgaacgcggtcaaggccgtggccgagctggacgacatggtc
gccaccgatcccaaggtggccaagctcatagacatttccaccaggctggagggactgtgc
cgccacgcctccacgcacgcggcgggcgtggtcatctccaacaagcccatgaccgagtac
cttcctctctacaaggggaagaagggcgaaatcgtgacccagttcgacatgaagaaggtc
gagaaagtcggcctcatcaagttcgacttcctgggtctgcgaaccatgacggtcatcgag
gactgcctggacatcatccgcgaacagggcaagaccgcgccgaacctggacaccctgcac
ctggacgacccggacaccttcgccatcttcgccaaaggcgacacggacggcattttccag
gtggaatcctcgggtatgcgcaaatacctgcggatgctccggccggaccgctttgaagac
ctcgtcgccatgctcgccctgtaccggccgggccccctgggcatgatcggctcccacggg
gtctccatggtcgacgaattcatcatgcgcaagcacggcgagatcgaggtcacctacccc
cacccgtcgcttgaggagaccctcaaacccacctacggggtcatggtctaccaggagcag
gtcatggccacggccatggtcatcgccaactattctctgggtgaaggcgacctgctgcgc
cgcgccatgggtaagaagatcaccgaggagatggcaaagcagcgttcccgcttcctcgaa
ggctcgcgggaaaacggcatcgacgacgccgtggccaacgacatcttcgacaccatggag
aaattcgcggcatacggcttcaacaagtcccactccgcggcctatgcgctcatctcctac
cacaccgcctatctcaaggcccatttcccggtggagttcatggccgcgctcatgtccacg
gaaatgaacaacaccgaaaagatcatcatgtacgtcaacgcctgccgcgacatggagatc
acggtccgccagccggacatcaactcgggccatgcgcgattttcggtcaaggacggggaa
attctgttcgccatggcggccatcaagaacgtgggcgaagaagccatcaacgagatcgcg
gccgagcgcacggcgaacggtccgttctccaacatcttcgatttctgcgagcgcgtgaac
ctgcgccgcgtgaccaagcgagtcctcgaatcgctcatcaaggcgggcgcgctggactgc
ttctcctgctcccgcgccgccctgctggaggacctcgacaaggccgtcgccctgggccag
aaaaaggccaaggaaaaagaatcggggatgctcaacatgttcgacatgctcggcggcggg
gaaaagaaggacggctccgtcacgcccacctgctccctgtgcgaggagttcgacgaccgc
gagaagcttcagctcgaaaaggaggtcctcggcttcttcctgtccgggcacccgctgctg
gcctaccggcacgacatgcaacggctgcgcaccgtgacgttggaggaatgcaagaccatc
cccaacggcactgaagtccgcgtggccgtaatcatcccggactacaagcagttcatcacc
cgcaagggcgaccccatggccttctgctccgccgaggatctgaccacgtacggcgagatc
accatgctgcccaatgtctacgccgaggcgcgcgaattgctcgacgcggaccgccccctg
ctggttctgggaaagatcgatgtacgcgaagaacccggcggccccgaggacgctcccaag
tccgccaagatactggccgacaaggtccagctcctggccgacgcggcccagggatcggac
cagcccgtgtccctttggatcggcgaaaagaacgccgtggacgcccacctcaacgcgctc
aaggtgatcctgaaacgctatcccggcaccaccagcgtcaacctcggcatcatcacccgc
gaatccgtaatcaaccttcggctgggcaacggctggaaggtcttccccggccgggacttc
tggaaggaagtggaggcgtggcaaaacggcgacgccaaagcgtaccgcgccgaggccgaa
gccgagcttctgtag
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