Pseudodesulfovibrio thermohalotolerans: LF599_15995
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Entry
LF599_15995 CDS
T09613
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pthe
Pseudodesulfovibrio thermohalotolerans
Brite
KEGG Orthology (KO) [BR:
pthe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pthe03032
]
LF599_15995 (topA)
03400 DNA repair and recombination proteins [BR:
pthe03400
]
LF599_15995 (topA)
Enzymes [BR:
pthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LF599_15995 (topA)
DNA replication proteins [BR:
pthe03032
]
Prokaryotic type
DNA Topoisomerases
LF599_15995 (topA)
DNA repair and recombination proteins [BR:
pthe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LF599_15995 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WFS62141
LinkDB
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Position
complement(3412765..3415176)
Genome browser
AA seq
803 aa
AA seq
DB search
MPKDLIIVESPAKVKTISKFLGKDYIVDASVGHVRDLPTRDLGVDEENNFAPHYEIIQGK
EDVVKRLRASAKKADTVYLAPDPDREGEAIAWHVAELLKPVNDNIRRIQFNEITSRAVKD
ALEHAQELNENLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFKADEYWPFKVFLEGENPPPFWMDLHKLEGKAVKPGVNHVSNADQAETLQEQLEKG
EFLVDSVQEKQRKRQPLPPYITSTLQQDANRRMGYSAKRTMSIAQRLYEGVELGARGTTA
LITYMRTDSVRIAQEAQEATKELIIEQFGADYYPPKTRNFKTKGGAQDAHEAIRPVDVTI
TPESVKSYLPSEQYKLYRLVWQRFVASQMAAATFWDTTVLVSAPQTVWRAKGERLLFAGF
LAAMDKAKTDEDVELPKLHEGETLKLNELKKEQKFTQPPARYSEASLVKTLEELGIGRPS
TYAAIISTLLEREYAKLEEKRFVPTELGFTVSDQLSEHFQALMDVSFTAQMESLLDDVAD
GKKNWEELLRNFGNDFYPTLEKARTEMGRSQQVTDVVCENCGKPMAIKFGKTGEFLGCTG
FPACRTIKNFTRDEEGNIQVVEREKPEDTGVTCEKCGRPMAIKQSRRGEFLGCTGYPDCK
SIVNFTRDEDGNIKVVESEKPEVVGVCPDCGGELLLKKARTGSRFIACSNYPDCTYAAPF
STGVPCPREGCSGELVEKSSRRGKIFYSCSEYPKCDYAVWNWPINEPCPKCDHPILVRKS
SKDKGEHIACPKKGCDYTRPIDE
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagacctgattatcgtcgagtcccccgccaaggtgaagactatctccaaattc
ctgggcaaggattacattgtggatgcctctgtgggccacgtgcgagacctgcccacacgc
gatctgggcgtggacgaggaaaacaacttcgccccgcattatgagatcatccagggcaag
gaggacgtggtgaaacggctgcgagcctcggccaagaaggcggacaccgtctatctcgcg
cctgacccggaccgcgagggagaggcaatcgcctggcatgtggccgaactgctcaagccg
gtcaatgacaacatccgccggattcagttcaacgaaatcacgtcccgggctgtcaaggac
gcccttgaacacgcccaggagctcaacgagaatctcttcgactcccagcaggcccggcgc
atcctggatcggctggtgggctacaagatttcccccatcctgtggaagaatgtgaagcgc
ggcatctcggccgggcgcgtgcagtccgtggcccttaagattctggtggagcgcgagaag
gagcggcgcgccttcaaggccgacgagtactggcccttcaaggtttttctcgaaggcgag
aatccgccgccgttctggatggatctgcacaagctcgaaggcaaggcggtcaagccgggc
gtcaatcacgtgtccaacgcggaccaggcggagactttgcaggagcagttggaaaagggc
gagttccttgtggactccgtgcaggagaagcagcgcaagcgccagcccctgccgccgtac
atcacctccactctgcaacaggacgccaaccggcgcatgggctactccgccaagcggacc
atgtccatcgcccagcggctctacgaaggcgtcgaactcggcgcgcgcggcaccaccgcg
ctcatcacctacatgcgtaccgactccgtgcgtatcgcccaagaggcgcaggaggccacg
aaggaactgattatcgagcagttcggcgcggactactatccgccgaagacccgaaatttc
aagaccaagggcggcgcgcaggacgcgcacgaagccatccggcccgttgacgtgaccatt
acgcccgagagcgtgaagagctatctgccatccgagcagtacaagctctatcggctcgtc
tggcagcggttcgtggcctcgcagatggcagcggccaccttctgggataccaccgtgctc
gtttcggccccgcagaccgtgtggcgcgccaagggcgagcggctgctcttcgccggtttc
ctggccgccatggacaaggccaagaccgatgaggacgtggagctgcccaagctgcacgag
ggcgagaccctcaagctcaacgagctgaaaaaggaacagaagttcactcagcccccggcc
cgctattcggaagcatccttggtcaagaccctggaggagctgggcatcgggcggccgtcc
acctatgcggccattatttccaccctgcttgagcgcgagtatgccaagctggaggagaaa
cggttcgtgcccaccgaattgggctttaccgtgtccgaccagctctccgagcatttccag
gctctcatggacgtgagcttcaccgcccagatggagtccctgctcgacgacgtggccgac
ggcaagaagaactgggaggagctgctccggaatttcggcaacgatttctatcccactctt
gagaaggcccgcaccgagatgggacgctcccagcaggtcacggacgtcgtctgcgagaat
tgcggcaagcccatggccatcaagttcggcaagacaggcgaattcctgggttgcaccggc
ttcccggcctgccggaccatcaagaacttcacccgcgacgaagaaggcaacattcaggtg
gtggagcgcgaaaagcccgaggacactggagtgacctgcgagaagtgcggccgccccatg
gccatcaagcagtcccggcgcggcgagtttctgggctgcaccggctatccggactgcaag
tccatcgtcaatttcacccgagacgaagatggcaacatcaaggtggtggagtccgaaaag
cccgaggtggtcggcgtctgccccgattgcggcggcgagctgctgctcaagaaggcgcgc
accggctccaggttcatcgcctgctccaactatccggactgcacctacgctgcgccgttt
tccacgggcgtcccgtgcccgcgtgaaggctgctcgggcgagctggtggaaaagtcctcg
cgtcggggcaagatattctactcctgctcggagtaccccaagtgcgattacgcggtttgg
aactggcccatcaacgagccgtgccccaaatgcgatcatcccatcctggtgcgcaagagt
tccaaggacaagggcgagcacatcgcctgcccgaaaaaagggtgcgactacacccgtccc
atcgacgaatag
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