Paenibacillus thiaminolyticus: NDS46_00205
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Entry
NDS46_00205 CDS
T08812
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pthi
Paenibacillus thiaminolyticus
Pathway
pthi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NDS46_00205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pthi03400
]
NDS46_00205 (mfd)
Enzymes [BR:
pthi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NDS46_00205 (mfd)
DNA repair and recombination proteins [BR:
pthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NDS46_00205 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WCF08414
LinkDB
All DBs
Position
40735..44265
Genome browser
AA seq
1176 aa
AA seq
DB search
MLNALMKALSGERDIDSIVEGIRSGMKEQLVSGLAGSTRQVMMAALHHQLERPLLVVTHN
MFSAQKVAEDLQECLSADQVLLYPANELVAAEAAISSPEVIAQRIEALTGIARGFRGIVV
TPYAGLRRFLPARETMASSQLSIAVGDEVKLDSFLESLVSLGYERTERVEAAGEFSVRGG
IVDLYPLTSPYPYRIEWFDDEIDSIRSFDATDQRSVEKLKLLNIPPAKEWIADRTRFAQA
AEAASARLEEQLARMTDRQVKEKLQQEIGYDIERLRGASYFSEMYKYVSLLYPERHTLYD
YMPQDTLLVIDEPARVMETAKQLERDEAEWSTHLLQNGKSLPSLELGLTADAAMGKRPFQ
TLFLALFLRQVPHTQPQNIVNVMCRTMQNFHGQMNVLKAEMERWKKAGANVIILANGAER
VDRVRRVLQDYQIPEPTIMTGHLQSGFELPSIHLVVITEGEMFSQKQRKTRRADASMKMD
NAERIRNYTELKIGDYVVHQNHGIGKYIGIGTLEINGIHKDYLHIMYAGGDKLSVPVEQL
HLIQRYVSSEEKEPKIYKLGGTEWTKVKNKVRSSVKDIADDLIKLYAARQASSGYAFDKD
TPEQQEFEDLFPYEETRDQLRAITEIKKDMEVPRPMDRLLCGDVGYGKTEVAVRAAFKAA
IEGKQVAILVPTTILAQQHYETFRERFADYPFNIQVMSRFRSRKDQNETIKGLKTGVVDV
VIGTHRLLSQDVVFKELGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMS
MLGVRDLSVIETPPENRFPVQTYVLEYSDSLVREAIERELSRNGQVYFLFNRVQGIHQMA
DHIKMLVPEAKVAVSHGQMSETELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVH
DADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEVAEKRLQAIKEFTELGSGFKIA
MRDLSIRGAGNLLGAEQHGFIASVGFDLYSQMLADEINKRKAELDGVAIHDQQELSTLID
LNIDAYLPPNYIYDSIQKIEIYKKVAGLASLEEVEELRDELIDRFGEPPLAVLQLLAVAR
LKLHAKQYGLESIVQRGDTVTMKVHPSAEPWLDRKKLATIAARIDRRIAVDREAHGTVKI
NARGLDGMQLLMQLEQFMLDATDAIKAKGELQHVAK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaacgcactcatgaaagcattatctggagagcgggatatcgactccatcgtcgaa
ggtattcgcagcggaatgaaggagcaattggtatccggcctggccggctcgacgcggcag
gtcatgatggctgctctgcatcatcagttggagcggcccctgctggtcgtaacgcacaat
atgttctctgcgcagaaggtggcggaggatctgcaagaatgcttgtctgcggaccaagtg
ttgctgtacccggcgaatgagctggtcgctgccgaagcggccatatccagtccggaagtg
attgcacagcggatcgaggcactgactggcatcgcccgcggatttcgcggcatcgtcgtc
actccgtatgcggggctgcggcggtttttgcctgcccgggagacgatggcatcctctcaa
ttgtccatcgccgtgggcgacgaggtgaagctagattccttcctcgagtccttggtctct
ctcggctatgagcggaccgaacgggtggaagcggccggagaattcagtgtccggggcggc
atcgtcgacctttacccgctgacatcaccttatccgtaccggatcgagtggttcgacgat
gagatcgattcgatccgttccttcgatgcgaccgatcagcgatcggtggagaagttgaag
ctgttgaatatccccccggccaaggaatggattgccgacagaacacgcttcgcccaggcg
gccgaagcggcttccgcacgtctcgaggagcagttggcgcgaatgaccgaccgccaggtg
aaggagaagctgcagcaggagattggttatgatatcgagcggctgcggggcgcttcctat
ttcagtgaaatgtataagtacgtgtcgctgctctatccggagcggcatacgctctatgac
tacatgccgcaggacacgctgcttgtgatagacgagccggcccgggtcatggagacggcc
aagcagttggaacgcgacgaagcggagtggagcacgcatctgctgcagaacggcaaatcg
ctgccgtcgctggagctgggccttaccgctgacgcggccatgggcaagcgcccgttccag
acgctgttcctggcgctgttcctgcgccaggtgcctcacacccagccgcagaacatcgtc
aatgtgatgtgccggacgatgcagaacttccatgggcagatgaatgtgctcaaggccgag
atggaacggtggaaaaaagcgggggcgaatgtcatcattctggccaacggagccgagcgg
gtagaccgcgtgcgccgggtgctgcaggactaccagattccggagccgacgattatgacc
ggccatctgcagtcgggcttcgagctgccttcgatccatctcgtggttatcaccgaaggc
gagatgttctcccagaagcagcgcaagacgcgtcgcgccgacgcaagcatgaagatggat
aatgcggagcgaatccgcaactacaccgaactgaaaatcggagattacgtggttcatcag
aatcatggaatcggcaaatatatcggcatcggaacgttggagatcaacggcattcataaa
gactatctgcatattatgtatgctggcggcgacaagctatccgtaccggtcgaacagctc
catctcattcagcgttatgtcagttcggaggagaaggagccgaaaatatacaagctgggc
ggcacggaatggactaaggtcaaaaacaaggtccgttcatcggtcaaggacattgccgac
gatctaattaagctgtacgccgctagacaagcctcgtccggctatgccttcgacaaggat
acgccagagcagcaagaattcgaagatctgttcccgtatgaagagacacgggatcagctg
cgggcgatcaccgagattaagaaggacatggaggtgccgcggccgatggatcggctgttg
tgcggcgatgtcggctacgggaagacggaagtcgcggtccgagccgctttcaaagcggcc
atcgagggcaagcaggtggcgattctggtgccgacgaccatcctggcacagcagcattac
gagacattccgcgagcgcttcgcagactatccgttcaatattcaagtaatgagccgcttc
cgatcgcgcaaagatcagaatgagacgatcaagggactgaagacgggggtcgtcgatgtg
gtcatcgggacgcaccgcctcctctctcaagatgtcgtgttcaaggaactcggattgctg
atcgtggatgaagagcagcgcttcggcgtcacgcacaaggagaagctgaagaagctgaag
acgaatgtggacgtgctgacgctgaccgctacgccgataccgcgcacgcttcatatgtcg
atgctcggcgtgcgggacttgtctgtcatcgagacgccgccggagaaccgcttcccggtt
cagacgtatgtgctggaatacagcgattcgctcgtacgagaagcgatagaacgcgagctg
tcccgcaacggccaagtgtacttcctgttcaaccgggtgcagggcatccatcagatggcg
gatcatatcaagatgctggtcccggaagcgaaggtggcggtgagccacgggcagatgtcg
gagacggagctggagaagacgattctcgacttcctcgacggggaatacgacgtgctggtc
agcacgagcattatcgagaccggagtggacattcccaatgtcaatacgctcatcgtgcat
gacgcggacaagatgggcttgtcccagctgtatcaactgcgcggacgggttggccgttcg
aaccggattgcctatgcgtacttcacgtaccagcgcgacaaagtattgaatgaggtcgcg
gagaagcgtctccaagcgatcaaggagttcacggagctcggctccggcttcaagattgcg
atgcgcgacctgtcgattcggggcgcaggcaatctgctgggcgcggagcagcatggattc
atcgcgtcggtcggcttcgatctgtactcgcagatgctggcggatgagatcaacaagcgc
aaggccgaactggacggggtcgcgattcacgaccagcaggagctgtcgacgctcatcgat
ctcaatatcgatgcctatttgccgccgaattatatttatgatagtattcagaagatcgag
atctacaaaaaagttgccggtctcgcctcattggaggaagtcgaagaattgcgcgatgaa
ctcatcgatcgctttggtgaaccgccgcttgccgtcttgcagctgcttgccgtcgcacgg
ctgaagctgcatgcgaagcagtatggattggaatccatcgtgcagcgcggggatacggtc
accatgaaggtccacccttcggctgaaccatggcttgaccgtaagaagctggcaacgatt
gcggcccgaatcgatcggcgcatcgccgtcgatcgcgaagcgcatggcaccgtgaaaatc
aatgcgcgcgggttggatggaatgcagctgctgatgcaattggagcagttcatgcttgat
gctacagacgcgatcaaagcgaagggagaattacaacatgttgcaaaataa
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integrated database retrieval system
