Paenibacillus thiaminolyticus: NDS46_05605
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Entry
NDS46_05605 CDS
T08812
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pthi
Paenibacillus thiaminolyticus
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pthi03016
]
NDS46_05605
Enzymes [BR:
pthi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NDS46_05605
Transfer RNA biogenesis [BR:
pthi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NDS46_05605
Prokaryotic type
tRNA splicing ligases
NDS46_05605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WCF09373
LinkDB
All DBs
Position
1225353..1226579
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AA seq
408 aa
AA seq
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MAYITTDGVRVWGQPEESAVAQAKTCARHGRVVQALLMADHHKGYSQPIGGVIVYDGQIS
PSGVGYDIACGNKAVRTNLYAADIQPRIGAIMDEIAGKISFGVGRNNKEPVDHELFDDPD
WAVYQAIGRHEHDTLKALARNQLGTVGSGNHYVDLFVEPESGRLWIGNHFGSRGFGHKTA
SGFLNLAAGREFLGKAPGESMDQPPVLLELDSELGDMYYRAMKLAGRYAYAGRDYVISQV
LSILGAEADFEVHNHHNFAWQERHSGRDTIVVRKGATPSAPGQLGFIGGSMGDISVIVRG
TDSEENRDAYYSTVHGAGRMMSRTQAAGRMNWKTRTRTGGQITPKQMQEAVRSFGVELRG
AGTDESPFVYRKLQAVLDAHQNTLDVLHVLKPIGVCMAGSNEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcatatataacaacagacggcgtccgggtatggggccagccggaggagagcgcggtc
gcccaggcgaagacctgcgcgcgccacgggcgcgtcgtccaggcgctgctgatggccgac
catcataaaggctacagccaaccgattgggggcgtcatcgtgtatgatgggcaaatctcg
ccttccggcgtcggctatgacatcgcctgcggcaacaaggcagtgcggacgaatctgtac
gcggcggatatccagccgcgcatcggcgcaatcatggacgagattgcgggcaaaatttca
ttcggcgtcggccgcaataataaggagccagtggatcacgagctgttcgatgatccggac
tgggctgtctatcaggcgattgggcgtcatgagcatgacacattgaaggcgctggcacgc
aaccaattgggcactgtcggcagcggcaatcattatgtcgacctgttcgtggagccggag
agcgggagactgtggatcgggaatcattttggcagcaggggcttcggccataagacggcg
agcgggttcctgaatctggccgccgggcgggaatttctcggcaaggcgccaggcgagagc
atggatcagccgccggtgctgctggagctggacagcgagctcggcgacatgtactaccgc
gccatgaagctggccgggcggtacgcctacgccggccgggactacgtcatcagccaagtc
ttgtccatcctcggggcggaggcggacttcgaagtgcataatcaccataacttcgcgtgg
caagagaggcatagcgggcgggacaccatcgtcgtccgcaagggggccactccttcggcg
cccggacagcttggcttcatcggcggtagtatgggcgatatttccgtcatcgtacgcggc
acagattcggaggagaaccgggatgcttattatagcacggttcatggagccggccggatg
atgagccgtacccaggcggccggccgcatgaactggaagacccgcacccggacgggcgga
cagatcacgccgaagcagatgcaagaagcggtccggagcttcggcgtcgagctgcgcggc
gcaggcaccgacgagagcccgttcgtctaccgcaagctgcaagccgtgctcgatgcgcac
cagaacacgctcgacgtgttgcatgtgctgaagccgatcggcgtctgtatggccggatcg
aacgagttcgacccgtacaaagactag
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