Paenibacillus thiaminolyticus: NDS46_09270
Help
Entry
NDS46_09270 CDS
T08812
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pthi
Paenibacillus thiaminolyticus
Pathway
pthi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NDS46_09270 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pthi03021
]
NDS46_09270 (rpoD)
Transcription machinery [BR:
pthi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NDS46_09270 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WCF10020
LinkDB
All DBs
Position
2071403..2072527
Genome browser
AA seq
374 aa
AA seq
DB search
MANDQHTGLETETALEHAKDQLIELGKKRGSLSYKEIAEKMATFDQDPEQMDEFYEQLSD
LGIEVSEADDEIGARANDRDNDDSDDFHFDDDLSLPPGIKINDPVRMYLKEIGRVPLLSA
EEEIELAKRIEQGDSEAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEK
FDHSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREP
TPEEIAAEMELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYE
LLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcaacatactggacttgaaacggaaacggcgctggaacatgcgaaggac
cagttgattgaactcggcaaaaagcgaggatcgctcagctacaaagagatagccgagaaa
atggcgacgttcgaccaagacccggaacaaatggatgagttctatgagcagctctccgat
ctgggtattgaagtaagtgaagccgatgatgagataggcgctcgtgccaacgaccgcgat
aacgatgattcggacgattttcattttgatgatgatctgtcactgccgccgggcatcaaa
atcaatgacccggtgcggatgtaccttaaagagatcggccgtgttccgctcttgtcggct
gaagaggaaattgaacttgcgaagcggattgagcagggcgattcggaagcgaagaagcgc
ttgaccgaggccaatctgcggttggtcgtcagcattgccaagcgttatgtcgggcggggc
atgctgttccttgatctgatccaagaaggaaatatggggcttatcaaagcggtggagaaa
ttcgaccacagcaaaggatataaattcagcacttatgcgacctggtggattcgccaagcg
attacgcgggctatcgccgatcaggcgcggacgatccggatcccggtccatatggtcgaa
acgatcaacaagctcgttcgcgtatctcgtcaactgcttcaggagctgggacgcgaaccg
acgccggaagagattgcggccgagatggaactgagcgtagagaaggtacgcgagataatg
aagattgcacaggagcccgtctccttggagacgccaatcggcgaagaggacgactcgcat
ctgggcgatttcatcgaggatcaggaggcgctggctccggcggacgccgccgcgtacgag
ctgctgaaggagcagttggaggatgtgcttgacacgctgaccgagcgtgaggagaacgtg
ctgcgcctgcgcttcggcctggacgacggccggacgagaacgctggaagaagtgggcaaa
gtatttggcgttacgcgcgagcgcattcgtcaaatcgaagcgaaggctctccgtaagctg
cgtcacccaagccgcagcaagaggttaaaagatttcttagaataa
DBGET
integrated database retrieval system
