Paenibacillus thiaminolyticus: NDS46_10825
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Entry
NDS46_10825 CDS
T08812
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
pthi
Paenibacillus thiaminolyticus
Pathway
pthi02020
Two-component system
pthi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NDS46_10825
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NDS46_10825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pthi03021
]
NDS46_10825
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pthi02035
]
NDS46_10825
Transcription machinery [BR:
pthi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NDS46_10825
Bacterial motility proteins [BR:
pthi02035
]
Flagellar system
Flagellar assembly proteins
Stator
NDS46_10825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
HTH_23
PhyR_sigma-like
CtpB_N-like
7TMR-HDED
Sigma70_ECF
Motif
Other DBs
NCBI-ProteinID:
WCF10303
LinkDB
All DBs
Position
2418314..2419099
Genome browser
AA seq
261 aa
AA seq
DB search
MSVQKIKPCSHYELWEQWKDNGDVEAKKQLIEIHLPIVEFVANKLAAGLPRNVSKDDLSS
HGVMGLIDAIEKFDYQRGLQFETYASWRVRGAILDGLRQGDWVPRSVREKAKKIEEAYQQ
LEQRYLRSVSDSEMSEFLNVSEQEFQGMLHDVNIMSVCSLEDPIREDESETRLSLLVDEK
AKNPESKVNEHYLKESLIYGIEKLTEKERMVISLFYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRTALEKHKSMLLEA
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgttcagaaaatcaaaccgtgctctcattatgagctttgggaacagtggaaggat
aatggggatgtcgaggcgaagaaacaacttatcgagattcacttgcccatcgtcgaattc
gtagcgaacaagctcgccgccgggctgccccgcaacgtcagcaaggacgatctatccagc
cacggcgtcatgggcctgatcgatgcgatcgagaagttcgactaccagcgcggcctccag
ttcgagacatacgcctcctggcgcgtacggggagctattctggacggtctgcggcagggt
gattgggtgccgcgttcggtgcgggagaaggcgaagaaaatcgaagaagcctaccagcag
cttgagcagcggtatttgcggtccgtatcggacagcgaaatgagcgaatttttgaatgtg
agtgagcaagaattccaggggatgctgcatgacgtgaacattatgtccgtctgctccttg
gaggacccgatccgcgaggacgaatccgagacgcgcctgtccttattggtggatgaaaag
gcgaaaaatccggaaagcaaagtgaatgagcactacttaaaggaatcgcttatttatgga
atcgagaagctgaccgagaaagagcggatggtcatctcgcttttctattacgaggatctg
tctctgagcgagatcgccgaagtgatgtcgctgtctccttctcgtatctcccagcttcat
tccaaagcgattttgcgtctccgaacggcattggaaaagcataagagcatgctgctggaa
gcgtaa
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