Paenibacillus thiaminolyticus: NDS46_11965
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Entry
NDS46_11965 CDS
T08812
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pthi
Paenibacillus thiaminolyticus
Pathway
pthi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NDS46_11965 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pthi03021
]
NDS46_11965 (rpoD)
Transcription machinery [BR:
pthi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NDS46_11965 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WCF10508
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All DBs
Position
2661319..2662197
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AA seq
292 aa
AA seq
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MLTNDQQDYDLMLPPGIKLDDPVRMYLKEIGRVPLLSAEEEIELAKRVVQGDAEAKQRLA
EANLRLVVSIARRYIGRGMMLLDLIQEGNMGLMRAVDKFDYTKGYKFSTYATWWIRQAIT
RSIADQARTIRVPVHMVETINKLNRISKELLQELGREPTPEEIAVKMEITPEKVREIMKI
GQEPVSIETPVGDENDSSLGDFIEDQEALAPADAAAYELLKVQLEDVLDTLTEREQNVLR
LRFGLDDGRTRTLEEVGHEFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgcttacgaacgatcaacaggactacgacctgatgctgccacccgggatcaaactcgat
gaccctgtgcgcatgtacttaaaagagatagggcgcgtaccgctgctgtccgcagaggaa
gagatcgaattggccaagcgggtcgtccagggggatgccgaagcgaagcagagactcgcg
gaggcgaatctccgtctggtcgtcagtattgcaagacggtatatcgggcgcggcatgatg
ctgctcgatctgattcaagagggcaatatgggcctgatgcgggccgtcgacaagttcgac
tacacgaagggctacaagttcagcacgtatgcgacgtggtggattcgtcaggcgattaca
cggtcgattgcggatcaggctcgcacgatccgggttccggttcatatggtcgagacgatt
aacaagctcaaccggatctcgaaggagctgctgcaggaactcggccgggagccgacgccg
gaagagatcgcggtcaagatggagattacgccggaaaaggtgcgggagattatgaagatc
ggccaggagccggtctcgatagaaactcctgtcggcgacgagaacgactccagtctggga
gatttcatcgaggatcaggaggcgctggctccggcagatgccgcggcttacgagctgctg
aaggtccaactggaggatgtgctcgacacgctgaccgagcgggagcagaacgtgctgcgt
ctccgcttcggactggatgacggccgcacccggacgcttgaagaggtaggccacgaattc
ggggtgacccgcgagcgcatccggcagatcgaagcgaaggcactccgcaaattaagacat
ccgagccgcagcaaacggttgaaggattttctcgaataa
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