Paenibacillus thiaminolyticus: NDS46_28215
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Entry
NDS46_28215 CDS
T08812
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pthi
Paenibacillus thiaminolyticus
Brite
KEGG Orthology (KO) [BR:
pthi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pthi03019
]
NDS46_28215 (hrpB)
Enzymes [BR:
pthi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NDS46_28215 (hrpB)
Messenger RNA biogenesis [BR:
pthi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NDS46_28215 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
Flavi_DEAD
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WCF08099
LinkDB
All DBs
Position
complement(6231698..6234259)
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AA seq
853 aa
AA seq
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MVEQQNRLPIEDALPALKEALQAGSGAVLVAEPGAGKTTRVPLALLDEPWLRGQRIVMLE
PRRLAARSAARYMARALEEKPGETVGYRVRLDTKVSAATRVEVITEGVLTRMLQEDPALE
GVGLLIFDEFHERHLHADLGLALALESQALLRGDLRILVMSATLEAEPVAALLGGVPVIH
SPGRTYPVDTHYAPQPESVPLERAVARTIAAALQRHDGDLMAFLPGAGEIRRTEEALYAE
LRPHGMDGRVRIAPLFGQLSAEAQDAAIAPGTDGRRKVVLATALAETSLTVEGVRIVVDS
GLMRVPRFSPRTGMTRLETLPVSRASADQRRGRAGRLGPGVCYRLWPEARHAQLPAQTTP
EILDADLAPLVLELAAWGTAAADLRWLTPPPAAALAQGADLLQRLGALTPAGTLTAHGRE
LAGSGLHPRLAHMIVRAEPLGLRAAACDLAALLGERDLFRKDPGTAETPLSPDLSLRLAA
LAARRAPQAASAAGGRLDEGAVRQVREQAQRYRQAFRAPADAPPPSAAEAGLLAAFAYPD
RIAERRADGRYLLANGRGAAFAPAVARSAPLAREPYLVALQLDDTGADSRILLAAALDRA
LLERHFAEQLVRETQVAWDAAAQAVRARERVRLGALTLADAPHPAPDAEAVQRALLQGIA
REGLALLPWTKQARQWQTRLQFMHRHQPDWPDAGEEALLATLEEWLGPHVYGMRSRADLQ
SLNLAAALEALLPWEKRQQIEREAPTHMTVPSGSRIAIDYTDPDRPVLAVRLQEVFGWQE
TPRIANGAVPLTLHLLSPAQRPVQVTQDLASFWQNTYFEVKKDLKGRYPKHYWPDDPHEA
IATRRTRPQPPRG
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggtggagcaacagaaccgattgccgatagaagatgccctgcccgcgctgaaggaggct
ctgcaggctggctccggggcggtgctcgtcgccgagccgggggcgggcaagacgacgcgc
gtgccgttggcgctgctggacgagccctggcttcggggccagcgcatcgtgatgctggag
ccgcggcggctggcggcccgttcggctgcccgctatatggcgcgggcgttagaagagaag
cccggcgagaccgtgggctaccgggtccgcctcgatacgaaggtgagcgccgcgacgcgg
gtggaggtcatcacggagggcgtcctgacccggatgctgcaggaggacccggcgctggaa
ggcgtggggctgctcatcttcgatgagttccatgagcggcatcttcacgccgatctcggc
ctggcgctggcgctcgaatcgcaagcgctgctgcgcggcgatctgcgtatcctcgtcatg
tccgccacgctggaggccgagccggtcgccgccctgctgggcggcgtgcccgtcatccat
agcccgggccggacgtatccggtggatacgcattatgccccgcagccggagagcgtgccg
ctcgaacgggcagtcgcccggacgatcgccgcggcgctgcagcgccatgacggcgacctc
atggcgttcctgcccggcgcgggcgagattcgccgcacggaggaggcgctctatgccgag
ctgcgcccgcacggcatggacgggcgggtgcggatcgccccgctgttcggccagctctcg
gccgaagcgcaggacgccgcgatcgcgcccggaacggatggccggcgcaaggtcgtgctc
gccacggcgctggccgagacgagcttgacggtagaaggcgtccgcatcgtcgtcgacagc
ggccttatgcgcgtgccgcgcttctcgccgcgcacagggatgacgcgtctggagacgttg
cccgtctcccgcgcgtccgccgaccagcggcgcggccgggccggccggctgggccccggc
gtctgctaccggctctggccggaagcgcggcacgcccagctcccggcgcagaccacgccg
gaaatccttgacgcggacctggccccgctcgtgctggagctggccgcctggggcaccgcc
gccgccgacctgcggtggctgaccccgccgcccgcggccgccctggcccaaggcgccgat
ctgctccaacggctcggcgccttgacgccggccgggaccttgacggcgcatgggcgcgag
ctggccgggagcggcctgcacccgcggctcgcgcacatgatcgtgcgggccgagccgctc
ggcctccgcgccgccgcctgcgatctggcggcgctgcttggcgagcgcgacctcttccgc
aaggacccgggcacggcggagacgccgctgagcccggatctgtccttgcgcctggcggcg
ctcgcggcccgccgcgctccgcaggcggcgtctgcggccggcggccggctggacgaaggc
gccgtccgccaggtgcgcgagcaggcgcagcgctaccgtcaggcgttccgcgcccctgcg
gacgcgccgccgccatctgccgccgaggcgggcttgctggccgcattcgcgtacccggac
cgcatcgcggagcgccgggcggacggccgctatctgctcgcgaacgggcgcggggcggcc
ttcgcccccgccgtggcccgcagcgctccgctcgcgcgcgagccctacctcgtcgccctg
cagctcgacgacaccggcgcggacagccgcatcctgctggcggctgccttggaccgcgcc
ctgctggagcggcacttcgccgagcagctcgtgcgggagacgcaggtcgcctgggatgcg
gcggcccaagccgtccgtgcgcgcgagcgcgtccggctgggcgcgctcacgctggcagac
gcgccgcaccccgcccccgatgcggaggcggtgcagcgcgcgcttctgcagggcatcgcc
cgggaagggctggccctgctgccgtggaccaagcaggcgcgccaatggcagacgcgcctg
cagttcatgcaccggcatcagccggattggcccgatgccggagaggaagccctcctcgcc
acgctggaggagtggctcggtccgcacgtctatggaatgcgaagccgtgcggacctgcag
agcctcaacctcgcggcggccctcgaagcgctgctcccgtgggagaagcggcagcagatc
gagcgggaagccccgacccatatgacggtgccgagcggatcgcggatcgcaatcgattac
actgatccggatcggccagtgctcgccgttcggctgcaggaagtgttcggctggcaggag
acgccgcgcatcgccaatggcgcggtgccgttgaccctgcacctgctctcgccggcccag
cgtccggtgcaagtcacgcaggacttggcgagcttctggcagaacacctacttcgaagtc
aaaaaggatctgaaaggccgctacccgaagcattattggccggatgatccgcacgaagca
atcgcgacacgccggacgaggccgcagccgccgcgcggatag
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