KEGG   Pseudomonas thivervalensis: CE140_00845
Entry
CE140_00845       CDS       T11089                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pthv  Pseudomonas thivervalensis
Pathway
pthv02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pthv00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CE140_00845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pthv03021]
    CE140_00845
Transcription machinery [BR:pthv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CE140_00845
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF GerE HTH_24 HTH_11 PhyR_sigma-like HTH_20 HTH_40 HTH_36 HTH_29 TetR_N HTH_38 DUF1804 HTH_Tnp_4 HTH_28 HTH_10 HAC6_helical
Other DBs
NCBI-ProteinID: AXA52958
UniProt: A0A2Z4ZM82
LinkDB
Position
197894..198415
AA seq 173 aa
MPANDLSLRSAVDVLYSDHHSWLQGWLRKRLGNAFDAADLTQDTFVRVIKARTALDIREP
RPYLSMIAKGLLIDLFRRRSLEQSYLEALAAMPQEQHPSLEEQAILLQALMEIDRLLLGL
GPRVRQAFILSQFDGLTYPQIAERLGVSVRTVNNHMAKAMEHCCLMQIQLQLS
NT seq 522 nt   +upstreamnt  +downstreamnt
atgcccgccaacgatctgtccctacgcagtgctgtcgacgttctgtacagtgatcatcac
agttggctccagggctggctgcgcaagcgcttgggcaatgccttcgatgcggctgacctg
acccaggatacgtttgtgcgggtcatcaaggcgcgcacggcgctggatatccgcgagccg
cgaccgtacctgtcgatgatcgccaaagggttgttgatcgacctgtttcgccgccgctcg
ctggaacaatcctacctcgaagccctggccgccatgccgcaagagcagcatccatcgctg
gaagagcaggcaatcctgctccaggcgctgatggagatcgaccgtctgctcctggggttg
gggccgcgcgtccggcaagcgttcatcctgtcgcagttcgatggcctgacctacccgcaa
attgccgagcgcctgggcgtcagcgtccgcacggtcaacaaccacatggccaaggccatg
gaacattgctgcctgatgcaaattcaattgcagctttcatga

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