KEGG   Pseudomonas thivervalensis: CE140_02915
Entry
CE140_02915       CDS       T11089                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pthv  Pseudomonas thivervalensis
Pathway
pthv02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pthv00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CE140_02915
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pthv03021]
    CE140_02915
Transcription machinery [BR:pthv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CE140_02915
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_ECF HTH_23 Sigma70_r4 HTH_11 PhyR_sigma-like HTH_20 HTH_IclR HTH_28 HTH_31 HTH_DeoR HTH_24 HTH_29 GerE HTH_40 HTH_7 DUF6362 HTH_38 MarR_2 HVO_A0261_N HTH_AsnC-type HTH_10 SpoIIID HTH_22
Other DBs
NCBI-ProteinID: AXA58332
UniProt: A0A2Z5A3F9
LinkDB
Position
complement(643904..644419)
AA seq 171 aa
MRSDETLGTADLGLLYRTHHSWLHGWLIRRIGCRENAADLAQDTFVRLLKSRQSSPLREP
RAYLSSIARGLMIDQYRRREVERAYLESVTLLPQHEVPSEESRLMILDALERIDRMLGML
KPRVRQAFLFARLDGLTCAQIAEKLGVSRATVERDLATALQHCYRLRYVEA
NT seq 516 nt   +upstreamnt  +downstreamnt
atgcgcagcgatgaaacactaggtactgcagatctagggctgctctatcgcacccaccac
tcgtggttgcacggctggctaatccgacgcattggatgtcgcgagaacgcagcagatttg
gcgcaggacaccttcgtccgtctgctcaaatcccgtcagtccagccccttgcgcgaacca
cgcgcctatttgagcagtatcgcccgcggactgatgattgatcagtatcgtcgtcgcgaa
gtcgaacgtgcctacttggaaagcgtgacgttgctgcctcaacacgaggttccctcggaa
gaaagccggctgatgattcttgatgcgctcgagcgcatagaccgcatgctcggtatgctt
aaaccaagagttcgccaggcatttttgtttgcccgactcgacggtctaacctgcgcgcaa
atagccgaaaagctgggtgtttcccgcgcgacggtggaacgcgacctggccactgccctg
caacactgctatcgcttgcgttatgtcgaggcgtga

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