Pseudomonas thivervalensis: CE140_11225
Help
Entry
CE140_11225 CDS
T11089
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pthv Pseudomonas thivervalensis
Pathway
pthv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pthv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE140_11225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pthv03019
]
CE140_11225
03009 Ribosome biogenesis [BR:
pthv03009
]
CE140_11225
Enzymes [BR:
pthv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CE140_11225
Messenger RNA biogenesis [BR:
pthv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CE140_11225
Ribosome biogenesis [BR:
pthv03009
]
Prokaryotic type
rRNA helicases
CE140_11225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AXA54902
UniProt:
A0A176NFU3
LinkDB
All DBs
Position
complement(2601460..2603133)
Genome browser
AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVTATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPAT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALNLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPIPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatctcaacccgaacattcttgctgcc
gtcactgcgactggctacgaagaaccttcggcgattcagcagcaatcgatcccgatcatc
atggccggccacgacatgattggccaggcgcaaaccggtacgggtaaaaccgctgcgttc
gccctgccgatcctgcatcgcatcgatcctgccaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgctttcgaaacctactccaagcag
atgcctggcgttaccgttgtggccgtttacggcggcgccccgatgggcccacaactgaaa
gccatccgtaatggcgcgcagatcgttgtcgccactccgggtcgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctggctaccgtgaaccacctggttctcgacgaagccgacgag
atgctcaagctgggcttcatggatgacctggaagtcatcttcaaggctctgccagcgact
cgccagactgtcctgttctcggccaccctgccgcaatcgattcgtgccattgccgagcgc
cacctgcgcgatccgcaacacgtgaagatccagaccaagacccagaccgtcaccgcgatc
gaacaggctcacctgctggttcacgccgaccagaagacttccgccgttctcagcttgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagcgccctggaagccaaaggctacaaagccgctgcgctgaatggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgtcgctgcccgtggcctggacgttccgcgcatcacccacgtgttcaacgtg
gacatgccgtacgatccggaatcctacgttcaccgtatcggccgtaccggtcgtgccggt
cgcgaaggtcgcgcactgttgctggtcaccccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtgactggccagaaggtggctgaagttcgcctgccggacgcccaggccgttctc
gatgcgcgcatcaagaaactgaccaacagcctgtcgccactggtggctgacgccgaatcg
acccacggagatctgctcgatcgcctgaccgccgacatcggttgcaccccacgtgccctg
gccgccgccctgttgcgcaaggccaccaacggtcaagcgctgaacctggctgcaatcgag
aaggaacgtcccctggtgccgaacaacgcaccgcgtggcgatcgtcctgagcgcaccggt
gaccgtccagaccgtggtgatcgcgagcgtcgcgcaccgatcccgctggctgaaggccgt
gcgcgctgccgtactgcgctgggtgcccgtgatggtatcgcggccaagaacctgctgggt
gcgatcctcaacgaaggcggcctggctcgcgaagcgatcggtcgcatccaggtgcgtgac
agcttcagcctggtagagctgccagaagatggtctggagaagttgctgaccaagttgaaa
gacacccgcgtggctggcaagcagctcaagctgcgtcgctaccgcgaagattga
DBGET
integrated database retrieval system
