Pseudomonas thivervalensis: CE140_19585
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Entry
CE140_19585 CDS
T11089
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pthv Pseudomonas thivervalensis
Pathway
pthv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pthv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE140_19585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pthv03019
]
CE140_19585
03009 Ribosome biogenesis [BR:
pthv03009
]
CE140_19585
Enzymes [BR:
pthv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CE140_19585
Messenger RNA biogenesis [BR:
pthv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CE140_19585
Ribosome biogenesis [BR:
pthv03009
]
Prokaryotic type
rRNA processing factors
CE140_19585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AXA56476
UniProt:
A0A2Z4ZFT8
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All DBs
Position
4464688..4467879
Genome browser
AA seq
1063 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAHTNQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPVAAPAAAPEPSLFKGLVKSLVSLFATKEEPAAPAVAAKPAATERPARNEERRNGR
QQTRNRNGRRDEERKPREERAPREERAPREPREERQPREAREEAPAVAREERAPRPPREE
RQPRAPREDRKPRGEREERVRELREPLDAAPTAAAATAEERPARQPREERAPRPPREERQ
PRAEQAAAAASEEEVLNAEEQLQEDGQDTAEGDRPRRRSRGQRRRSNRRERQRDANGNVI
EGSEESESNENAEAPSAADLAAGLAVTAAVASSAISAPAEAQAHEQAERATAAVESAPVE
APVVEATTPVEATASPEVELAPAPEAQPEAEVAAEPAPVVEAPVVAAEPVIEAPAEEKAP
EPVREEQTAFNWTAEPAAPAPVVEPEPTPEPVKAVEPEVVEPAPVVEAPVVAEAPAPVEE
PAPASALTANGRAPNDPREVRRRKREAERLQKEAEQAAAAAAQAPAAEPAPVVEEVVEAA
PAPVAETPVESAPTFDEPQHTAEEVAPRHTEALEKEHEPKPHA
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagac
ggccagcgcctctacgacctggatatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccggattactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgccgccctgaccactttcatcagcctg
gccggccgttacctggtcctgatgccgaacaacccgcgtgccggtggtatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgtgaagccctgaacggcctggttgccccggct
gacatgggcctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactgtggaccgccatcaaagaagcctcgctggatcgttcc
gcgccattcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcattcgccaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgccttccagcgcgtcgtc
gaactgccgtccggcggttccatcgtcatcgacccgaccgaagccctggtatccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
cttgaagcggccgaggaaattgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagaaaaggtc
cgtgaatgcctggaagccgaccgcgcccgcgtacaggtcggtcgtatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccgtccctgggcgaaagcagcggcatcgtt
tgcccgcgttgcaacggcaccggcatcatccgtgacgtcgagtcgctgtccctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaggtg
ccgatcccggtggccgcgttcctgctcaacgaaaagcgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcccgtatcgtcatcctgccgaacgatcacctcgagacgccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagcccataccaaccagtccagctacgaa
atcgccgctgccgctgccgaagtggaagaagtccagccggccgccgccactcgcaccctg
gttcgccaggaagcagcggtcaagaccgcaccggcccgcgccaacgccccggtgccaacc
gaagtggccgctccggttgccgcccccgccgcagccccggaaccgagcctgttcaaaggc
ctggtgaagtcgctggtcagcctgttcgccaccaaggaagagcctgctgccccggccgtc
gccgccaagcctgccgctaccgagcgcccggcccgcaacgaagaacgccgcaatggtcgc
cagcagacccgcaaccgcaacggtcgtcgcgacgaagagcgtaagcctcgcgaagaacgt
gcaccgcgtgaagagcgcgcgccacgtgagccgcgtgaagaacgccagccgcgcgaagcc
cgtgaggaagcgcctgccgtagcccgcgaagaacgcgcaccgcgtccgccacgtgaagaa
cgccagccacgcgcgccgcgtgaagatcgcaagccacgtggcgagcgtgaagaacgtgtt
cgcgaactgcgagagcctctggatgccgcaccgaccgctgcagccgccaccgctgaagag
cgtccggcccgccagcctcgtgaagaacgcgcaccgcgtccgccacgtgaagaacgccag
ccacgcgccgagcaggccgccgccgctgccagcgaagaagaagtgctgaacgccgaagag
cagttgcaggaagatggccaggacaccgccgaaggcgatcgtccacgccgccgctcccgc
ggccagcgtcgtcgcagcaaccgtcgtgagcgtcagcgcgacgccaacggcaacgtgatc
gaaggttcggaagagtccgagtccaacgagaacgccgaagcgccaagcgctgcggacctc
gccgccggcctggccgtgactgcggccgttgccagcagcgcgatcagcgccccagccgaa
gcccaggcgcacgaacaagccgaacgcgccaccgctgcagtggaaagcgcgccggttgaa
gcgcctgtggtcgaagccacgactccggtagaagccaccgcttcgccagaagtggaactc
gcaccggcacctgaagcccagcctgaagcggaagtcgccgccgagcctgcgccggtcgtc
gaagctccagtggttgctgccgaaccggtcatcgaagcaccggccgaggaaaaggcaccc
gagcctgttcgcgaggagcagactgcgttcaactggaccgccgagccagccgcaccggca
ccggttgtcgagcctgagccgacgccagaacccgtgaaagcagtcgagccagaagtggtc
gagcctgctccagtggtcgaagcacctgtggttgccgaagcccctgccccggtggaagag
cctgcacctgccagcgccctgaccgccaatggccgcgcaccgaacgatccgcgtgaagtg
cgtcgtcgcaagcgtgaagccgagcgtctgcagaaggaagccgaacaagccgccgctgcc
gccgctcaagcgcctgctgccgagcctgctccagtcgtggaagaagtcgtcgaggcagcc
cctgccccggtcgctgagaccccggttgaatcggcgccgacgttcgacgaacctcagcac
accgctgaagaagtcgcaccgcgtcacactgaagccttggaaaaagagcacgagcctaaa
cctcacgcctga
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