Pseudomonas thivervalensis: CE140_24685
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Entry
CE140_24685 CDS
T11089
Name
(GenBank) type IV secretion protein Rhs
Organism
pthv Pseudomonas thivervalensis
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
RNAse_A_bac
DUF6531
RHS
TEN_YD-shell
OCRE
Calycin_like
Motif
Other DBs
NCBI-ProteinID:
AXA57421
LinkDB
All DBs
Position
complement(5565224..5569897)
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AA seq
1557 aa
AA seq
DB search
MEQVNRIEQELDSFKDTLSVYREQLERWYSRAADRASHAADLPALMGMERLIRFGDSTTA
VSSGDDDFLSTVVQCPQGGVMTIESKFESVYDIPLGDIVVDVVDVDSGEVTPVTLDAQGL
GTFKGEAGKSYRVHVQGEVSAQQIKSLFSSYDGLTGDLTDWLRGEWQGFKPRWAQQSLAT
SAAAVGNGLLAGSWAAIEGVWDSISLLSDILKDPGQFVQRLGDSAERLKQLARDTPAVMA
KLQLLASDEAALCLLVRTASLWLEMLPPSEIAGETAEALSTVVVQLVIDLLIGVVLTFAG
AGAGIAYLSMRLARHSVTLLNAVQRFIKAIFAVVNGFMTYVDRYKTVAARGIAAGIKKGR
MQLRWDAQRNTTLKKHEPHDDAPAQSKNPNGDSADTAAQTQTSGCPVSMVTGEELLTLDD
GTLDGRLPFVFTRLYRTSAADLDIGLGRGWSHALAHRLELDGEQVTWVDQENRRTLFPLP
TTQRPAIHNSLARAAIYLGTEPDELIVAQPGENAPFLHFRDGHLTALSDRYDNRLSVQRN
IHGDISRLDSGAGRSLRLRYQQRHLIAVDYQSFHPAVTLDDAWRTEQTLVSYRYDGRFRL
IEATNAAGESERYDYDDQHVILQRQLAGGASFYWEWQGVGPASRCVRHWASFAQMDSRYT
WGEDGSVTVQHLDGSQEVYVHDDRARLVRKVEPDGGEHLKAYDEQGRLIAEQDPLGAVRE
YRYDDVGRLVALIPPDEAPTSYEYRNGFLHTRQRGKAVWTYRRNARGDVIASIDPDGQRT
EYAYDAHGQLLARYDPDGGEHRFTWSRLGQLTEEILPNGGRRHFSYDALGRLLSRRDEHG
ALTHYQWDAVGRLLQVTLPTGAIRAWSYNAYGKVIAERDEQGRTTRYEYADDLHLVSRRL
NPDGSELKYRYDSARLLLTEIENESGEHYQLDYTPNGLIRQQVGFDGQRTAYAYDLXGHL
LEXXEHGEDGSQWVTRYQRDAAGRLRVKTLPDGQAXXYRYDELGRLVHVDDGSDHPLAFE
YDAQNRLVTEHQGWGTLRYRYDACGRLNHLRLPDDSRLDYHHAPGGALTAIDLNGARLTE
HRFDGGRERQRQQGRLLSDYAYDEQGRLKAQTVWQNPQQQLFWRDYTYSPKGNLQTLSDY
RNRRSYQYDPLDRLTRIDFSHSEPPEHFSHDPAGNLLMQDRPGPTTLKGNRLLKEGDRHY
DYDAFGNLTRERRGQALVSAYRYDSQHRLIGVITADGRETSYRYDAFGRRISKTVDGLTT
EFFWQGDQVVAENSPHHHRSYVYEPGTFRPLAMLNGEGPEKATPFYYHLDHLGTPQELTN
PAGQIVWSARYNGYGKLTELTHGDGEQLEQPLRFQGQYFDPESGLHYNRHRYYNPETGRY
LTPDPSKLVGGLNGYRYTLNPTGWVDPLGLACQCPGDIEVDGPFSEIVPGGGLAAHEARG
GHLMKKHIGRSEAQLRKRLDSEPHVPTASTFPDRATAESAASNVLKTKSKEIEVFLSDKL
EKSLLLQQSFPSPVGVGVIRKSGKLEPLSVVTLVLRKSNKSPVGYNLHTGFVEKNEK
NT seq
4674 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggtgaaccgtatcgagcaggagctcgacagcttcaaagacaccctgtcggtc
taccgcgagcagctcgagcgctggtatagccgggcggcggaccgggccagccatgcggcc
gacttgcccgcgctgatgggcatggagcggctgatccgcttcggcgacagcacgaccgcc
gtcagcagcggcgacgatgatttcctttccaccgtcgtccagtgcccccaaggcggggtg
atgacgatcgagagcaagttcgagtcggtgtacgacatccccctgggcgacatcgtggtg
gatgtcgtggatgtggacagtggcgaggttacgccggtcaccctggacgcccagggcctg
gggaccttcaagggggaggcgggcaagtcctatcgggtgcatgtccagggcgaggtgtcc
gcccagcagataaaaagcctgttttcttcctacgatggtttgactggcgatctgacggac
tggctacgcggcgagtggcaaggtttcaagccacgatgggcgcagcagtccctggcgact
tcggcggccgcggtggggaacggcttgctcgccggcagttgggcggcgatcgagggggta
tgggacagcatcagcctgctgtcggacattctcaaggatcctggtcagtttgttcagcga
ctgggtgacagcgctgagcggttgaagcagctggcgcgagacactccggcggtgatggcg
aagctgcaactactggccagcgacgaagcggcgctgtgcctgttggtgcgcacggcgagc
ctctggctggagatgttgccgcccagcgagattgctggcgaaacggccgaagccctatcg
accgtggtggtgcagttggtgatcgacttgctgatcggcgtggtcttgacctttgccggg
gcgggggccgggatcgcctacctgtcgatgcggttggccaggcacagcgtaaccttgctg
aacgccgtgcagcgtttcatcaaggcgatcttcgccgtggtcaacggcttcatgacctac
gtggaccgctacaaaaccgtggcagcacgcggcatagcggcggggataaaaaaaggtcgg
atgcaactgcgctgggatgcacagcgcaacaccacactgaaaaaacacgaaccccacgac
gacgcccccgcccaatcgaaaaaccccaacggcgacagcgccgacaccgcggcccagacc
cagaccagcggctgcccggtgtcgatggtcactggcgaagaactactgaccctggacgac
ggcaccctcgacggccgcttgccgtttgtcttcacccgcttgtaccgcaccagtgccgcg
gacctggacatcggcctcgggcgcggctggagccatgccctggcccatcgcctggaactc
gacggcgagcaggtcacctgggtcgaccaggaaaatcgtcgcacgctctttcctctgccc
accacccagcgcccggcgatccacaacagcctggcccgggcggcgatctacctgggcacc
gagccggacgagctgatcgtcgcccaacccggcgaaaacgcgccgttcctgcactttcgt
gacggccacctgaccgccctcagcgaccgctacgacaaccgcctgagcgttcaacgcaac
atccacggcgacatcagccgcctggacagcggcgccgggcgttccttgcgcctgcgctac
caacagcgtcacctgatcgccgtcgactaccagagcttccacccggccgtcaccctcgac
gacgcctggcggaccgaacagacgctggtgtcctaccgctacgacggacgtttccgactg
atcgaagcgaccaatgccgccggtgaaagcgaacgctacgactacgacgaccagcacgtc
attctccagcggcaactggccggcggcgcgagtttctactgggagtggcaaggcgtcggg
ccggcgtcccgttgcgtacggcattgggcctcgtttgcgcagatggacagccgctacacc
tggggcgaggacggcagcgtcacggtgcagcacctggatggcagccaggaagtgtatgtc
cacgacgaccgggcgcggctggtgcgcaaggtcgagcccgacggcggcgagcacctcaag
gcctatgacgaacaaggccggttgatcgccgaacaggacccgctgggagcggtccgcgaa
taccgctacgacgatgtcggacggctggtggcgctgattcctccagacgaggcgccgacg
tcctacgaataccgcaacggtttcctgcacacccgtcagcgcggcaaggccgtgtggacc
taccgccgcaatgcccggggcgatgtgatcgccagcatcgatccggacggccagcgtacg
gaatatgcctacgacgcccatgggcaactgctggcaaggtacgacccggacggcggcgaa
catcgcttcacctggagtcgcctgggccaactgaccgaagaaatcctgcccaacggcggt
cgccggcatttttcctacgatgccctgggacgtttgctcagccgccgggacgaacacggc
gccctcacgcactaccaatgggacgccgtcggccgactgctgcaagtgaccctgcccacc
ggcgccatccgggcctggagctacaacgcctacggcaaggtcatcgccgagcgcgacgag
caaggccggaccacccgctacgaatacgccgacgacctgcacctggtcagccgtcgcctg
aaccccgacggcagcgagctgaagtatcgctacgattcggcgcggctgttgctgaccgag
atcgaaaacgaatccggcgaacactatcagctggactacacgcccaacggcttgatccga
cagcaagtcggcttcgacggccaacgcaccgcctacgcctacgacctcaanggncacctg
ctggagaanancgagcacggcgaggacggctcgcaatgggttacccgttaccagcgtgac
gcggccgggcgactgcgggtcaagaccttgcccgacggccaggccnncgantaccgctat
gacgagttgggccggctggtccacgtcgacgacggcagcgaccatccgctggccttcgaa
tacgacgcccagaaccggctggtcactgaacaccagggctggggcaccctgcgctatcgc
tacgatgcctgcggacgcctcaaccacctgcgcctgccagacgacagccggctcgactac
caccacgccccgggtggtgcgctgaccgccatcgacctcaacggcgcgcgcttgaccgag
caccgctttgacggnggtcgcgaacgacagcgccagcagggccggctgctcagtgactat
gcgtacgacgaacaaggccgcctcaaagcccaaaccgtgtggcagaacccacagcagcaa
ctgttctggcgcgattatacctacagccccaaaggcaacctccagaccctttccgactac
cgaaaccgccgcagctaccagtacgacccgctggatcgcctgacccgcatcgacttttcc
cacagcgaaccgccggaacacttcagccacgacccggccggcaacctgttaatgcaggac
cgtcccggcccgaccaccctcaagggcaatcgcctgctgaaggagggcgaccgccactac
gactatgacgctttcggcaacctgacccgcgaacgccgcggccaggccctggtcagcgcc
taccgctacgacagccaacaccgcctgatcggcgtcatcacggccgacggccgcgaaacc
tcctaccgctacgacgccttcggccgacgcatcagcaagaccgtggacggcctgaccacg
gagtttttctggcaaggcgaccaggtcgtcgccgaaaacagcccgcaccaccaccgcagc
tacgtctacgaaccgggcaccttccgtccattggcgatgctcaacggcgaaggcccggaa
aaagccacgccgttctactaccacctcgaccacctgggcacgccccaggaactgaccaac
cccgccggccagatcgtctggtcggcgcgttacaacggctacggcaaactcaccgaactc
acgcacggtgacggcgaacagcttgaacaaccgctgcgtttccaaggccaatacttcgac
cccgaaagcggcctgcactacaaccggcaccgctactacaatcccgagactggccgctat
ttgacgcctgacccgagcaagttggtgggggggctcaatgggtatcggtacaccttgaac
ccgacggggtgggtggatccgttggggttggcatgccagtgtcctggtgatattgaggtc
gatgggccattcagcgagattgtgccggggggcggtttggcggcgcatgaggctcgagga
gggcatttgatgaaaaagcacataggccgctccgaagctcagttaagaaagcgcctggat
tcagagcctcatgtgcctaccgcatcgacatttcctgatagagcaacagcggagtcggcg
gcctccaatgtgttaaaaacgaagagcaaagaaatagaagtttttttgagtgataagtta
gaaaagtcgcttcttctacagcaatctttcccttctcctgtcggggtcggcgttatacgt
aaaagtggaaaattggaacctctttcggttgtgaccctggtccttaggaagtccaataaa
tcgcctgtcggatataacctacatacaggattcgtcgaaaaaaatgagaaatag
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