Pseudomonas thivervalensis: CE140_27280
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Entry
CE140_27280 CDS
T11089
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pthv Pseudomonas thivervalensis
Pathway
pthv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pthv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE140_27280 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pthv03021
]
CE140_27280 (rho)
03019 Messenger RNA biogenesis [BR:
pthv03019
]
CE140_27280 (rho)
Transcription machinery [BR:
pthv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CE140_27280 (rho)
Messenger RNA biogenesis [BR:
pthv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CE140_27280 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
AXA57906
LinkDB
All DBs
Position
complement(6113511..6114770)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaag
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttccttcgctccgcagacgcttcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttacttcgcgctgctcaaggtcgacacgatcaac
ttcgatcgtccggagaacgcgaagaacaagattctcttcgagaacctgaccccgctgttc
ccgacggtgcgcatgaagatggaagccggcaacggttccaccgaagacctcaccggtcgt
gtcatcgacctgtgtgcacccatcggcaaaggccagcgtggcctgatcgtggcgccgccg
aaagcgggcaagacgatcatgctgcagaacatcgcggccaacatcgcccgtaacaacccg
gaagttcacctgatcgtgctgctgatcgacgaacgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgacgttcgacgagccgccaacccgccacgtg
caggttgccgagatggtgatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtcatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgacgcccacgcgctggaaaaaccgaagcgtttc
ttcggcgccgcacggaacatcgaggaaggtggttcgctgaccatcatcgccaccgcactg
gttgaaaccggttcgaagatggacgaagtgatctacgaggaattcaagggtaccggcaac
atggagctgcccctggaccgtcgtatcgccgagaagcgtgtgttcccggccatcaacatc
aaccgttccggcacccgccgcgaagagttgctgaccgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcatccgatggatgaagtcgccgccatcgagttcctggtc
gacaagctgaagacgaccaagaccaacgatgagttcttcctgtcgatgaaacgcaagtaa
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